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编码多聚半乳糖醛酸酶抑制蛋白的两个紧密连锁基因(VrPGIP1和VrPGIP2)的新等位基因,与赋予绿豆(Vigna radiata)种质V2709对豆象(Callosobruchus spp.)抗性的位点相关。

Novel Alleles of Two Tightly Linked Genes Encoding Polygalacturonase-Inhibiting Proteins (VrPGIP1 and VrPGIP2) Associated with the Locus That Confer Bruchid ( spp.) Resistance to Mungbean () Accession V2709.

作者信息

Kaewwongwal Anochar, Chen Jingbin, Somta Prakit, Kongjaimun Alisa, Yimram Tarika, Chen Xin, Srinives Peerasak

机构信息

Department of Agronomy, Faculty of Agriculture at Kamphaeng Saen, Kasetsart University, Bangkok, Thailand.

Center for Advanced Studies for Agriculture and Food, Kasetsart University Institute for Advanced Studies, Kasetsart University, Bangkok, Thailand.

出版信息

Front Plant Sci. 2017 Sep 28;8:1692. doi: 10.3389/fpls.2017.01692. eCollection 2017.

Abstract

Nearly all mungbean cultivars are completely susceptible to seed bruchids ( and ). Breeding bruchid-resistant mungbean is a major goal in mungbean breeding programs. Recently, we demonstrated in mungbean () accession V2802 that , which encodes a polygalacturonase inhibiting protein (PGIP), is the locus responsible for resistance to and . In this study, mapping in mungbean accession V2709 using a BCF population of 355 individuals revealed that a single major quantitative trait locus, which controlled resistance to both and , was located in a 237.35 Kb region of mungbean chromosome 5 that contained eight annotated genes, including () and (). and are located next to each other and are only 27.56 Kb apart. Sequencing and in "V2709" revealed new alleles for both VrPGIP1 and VrPGIP2, named and , respectively. has one single nucleotide polymorphism (SNP) at position 554 of wild type . This SNP is a guanine to cystine substitution and causes a proline to arginine change at residue 185 in the VrPGIP2 of "V2709". has 43 SNPs compared with wild type and "V2802", and 20 cause amino acid changes in VrPGIP1. One change is threonine to proline at residue 185 in VrPGIP1, which is the same as in VrPGIP2. Sequence alignments of VrPGIP2 and VrPGIP1 from "V2709" with common bean () PGIP2 revealed that residue 185 in VrPGIP2 and VrPGIP1 contributes to the secondary structures of proteins that affect interactions between PGIP and polygalacturonase, and that some amino acid changes in VrPGIP1 also affect interactions between PGIP and polygalacturonase. Thus, tightly linked and are the likely genes at the locus that confer bruchid resistance in mungbean "V2709".

摘要

几乎所有绿豆品种对豆象(bruchids)都完全敏感。培育抗豆象绿豆是绿豆育种项目的主要目标。最近,我们在绿豆(Vigna radiata)种质V2802中证明,编码多聚半乳糖醛酸酶抑制蛋白(PGIP)的VrPGIP2是负责抗绿豆象和四纹豆象(Callosobruchus maculatus)的Br基因座。在本研究中,利用一个由355个个体组成的BCF群体对绿豆种质V2709进行定位分析,结果表明,一个控制对绿豆象和四纹豆象抗性的单一主要数量性状基因座位于绿豆5号染色体上一个237.35 Kb的区域,该区域包含8个注释基因,包括VrPGIP1和VrPGIP2。VrPGIP1和VrPGIP2彼此相邻,相距仅27.56 Kb。对“V2709”中的VrPGIP1和VrPGIP2进行测序,分别发现了名为VrPGIP1 - 2和VrPGIP2 - 2的新等位基因。VrPGIP1 - 2在野生型VrPGIP1的第554位有一个单核苷酸多态性(SNP)。这个SNP是鸟嘌呤到胱氨酸的替换,导致“V2709”的VrPGIP2中第185位的脯氨酸变为精氨酸。与野生型和“V2802”相比,VrPGIP2 - 2有43个SNP,其中20个导致VrPGIP1中的氨基酸变化。一个变化是VrPGIP1中第185位的苏氨酸变为脯氨酸,这与VrPGIP2中的变化相同。将“V2709”的VrPGIP2和VrPGIP1与菜豆(Phaseolus vulgaris)PGIP2进行序列比对,结果表明,VrPGIP2和VrPGIP1中的第185位残基有助于影响PGIP与多聚半乳糖醛酸酶相互作用的蛋白质二级结构,并且VrPGIP1中的一些氨基酸变化也会影响PGIP与多聚半乳糖醛酸酶之间的相互作用。因此,紧密连锁的VrPGIP1和VrPGIP2可能是绿豆“V2709”中Br基因座上赋予抗豆象能力的基因。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3b3d/5625325/4938b6c6a3a7/fpls-08-01692-g0001.jpg

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