Porter Megan L, Roberts Nicholas W, Partridge Julian C
Department of Biology, University of Hawai'i at Mānoa, Honolulu, HI 96822, USA.
School of Biological Sciences, University of Bristol, Tyndall Avenue, Bristol BS8 1TQ, UK.
Mol Phylogenet Evol. 2016 Dec;105:160-165. doi: 10.1016/j.ympev.2016.08.007. Epub 2016 Aug 12.
Understanding the link between how proteins function in animals that live in extreme environments and selection on specific properties of amino acids has proved extremely challenging. Here we present the discovery of how the compressibility of opsin proteins in two evolutionarily distinct animal groups, teleosts and cephalopods, appears to be adapted to the high-pressure environment of the deep-sea. We report how in both groups, opsins in deeper living species are calculated to be less compressible. This is largely due to a common set of amino acid sites (bovRH# 159, 196, 213, 275) undergoing positive destabilizing selection in six of the twelve amino acid physiochemical properties that determine protein compressibility. This suggests a common evolutionary mechanism to reduce the adiabatic compressibility of opsin proteins. Intriguingly, the sites under selection are on the proteins' outer faces at locations known to be involved in opsin-opsin dimer interactions.
事实证明,了解生活在极端环境中的动物体内蛋白质的功能与氨基酸特定属性选择之间的联系极具挑战性。在此,我们展示了关于硬骨鱼和头足类这两个在进化上截然不同的动物群体中视蛋白的压缩性如何似乎适应深海高压环境的发现。我们报告了在这两个群体中,生活在更深海域的物种中的视蛋白经计算压缩性更低。这在很大程度上是由于一组共同的氨基酸位点(bovRH# 159、196、213、275)在决定蛋白质压缩性的十二种氨基酸物理化学属性中的六种属性上经历了正向去稳定选择。这表明存在一种共同的进化机制来降低视蛋白的绝热压缩性。有趣的是,被选择的位点位于蛋白质的外表面,处于已知参与视蛋白 - 视蛋白二聚体相互作用的位置。