Abram Timothy J, Floriano Pierre N, Christodoulides Nicolaos, James Robert, Kerr A Ross, Thornhill Martin H, Redding Spencer W, Vigneswaran Nadarajah, Speight Paul M, Vick Julie, Murdoch Craig, Freeman Christine, Hegarty Anne M, D'Apice Katy, Phelan Joan A, Corby Patricia M, Khouly Ismael, Bouquot Jerry, Demian Nagi M, Weinstock Y Etan, Rowan Stephanie, Yeh Chih-Ko, McGuff H Stan, Miller Frank R, Gaur Surabhi, Karthikeyan Kailash, Taylor Leander, Le Cathy, Nguyen Michael, Talavera Humberto, Raja Rameez, Wong Jorge, McDevitt John T
Rice University, Department of Bioengineering, Houston, TX, USA.
NeoTherma Oncology, Houston, TX, USA.
Oral Oncol. 2016 Sep;60:103-11. doi: 10.1016/j.oraloncology.2016.07.002. Epub 2016 Jul 20.
Despite significant advances in surgical procedures and treatment, long-term prognosis for patients with oral cancer remains poor, with survival rates among the lowest of major cancers. Better methods are desperately needed to identify potential malignancies early when treatments are more effective.
To develop robust classification models from cytology-on-a-chip measurements that mirror diagnostic performance of gold standard approach involving tissue biopsy.
Measurements were recorded from 714 prospectively recruited patients with suspicious lesions across 6 diagnostic categories (each confirmed by tissue biopsy -histopathology) using a powerful new 'cytology-on-a-chip' approach capable of executing high content analysis at a single cell level. Over 200 cellular features related to biomarker expression, nuclear parameters and cellular morphology were recorded per cell. By cataloging an average of 2000 cells per patient, these efforts resulted in nearly 13 million indexed objects.
Binary "low-risk"/"high-risk" models yielded AUC values of 0.88 and 0.84 for training and validation models, respectively, with an accompanying difference in sensitivity+specificity of 6.2%. In terms of accuracy, this model accurately predicted the correct diagnosis approximately 70% of the time, compared to the 69% initial agreement rate of the pool of expert pathologists. Key parameters identified in these models included cell circularity, Ki67 and EGFR expression, nuclear-cytoplasmic ratio, nuclear area, and cell area.
This chip-based approach yields objective data that can be leveraged for diagnosis and management of patients with PMOL as well as uncovering new molecular-level insights behind cytological differences across the OED spectrum.
尽管手术程序和治疗方法取得了重大进展,但口腔癌患者的长期预后仍然很差,其生存率在主要癌症中处于最低水平。迫切需要更好的方法来在治疗更有效的早期阶段识别潜在的恶性肿瘤。
从芯片细胞学测量中开发强大的分类模型,以反映涉及组织活检的金标准方法的诊断性能。
使用一种强大的新型“芯片细胞学”方法,对714名前瞻性招募的患有可疑病变的患者进行测量,这些患者分属6个诊断类别(均通过组织活检——组织病理学确诊),该方法能够在单细胞水平上进行高内涵分析。每个细胞记录了200多个与生物标志物表达、核参数和细胞形态相关的细胞特征。通过为每位患者平均编目2000个细胞,这些工作产生了近1300万个索引对象。
二元“低风险”/“高风险”模型在训练模型和验证模型中的AUC值分别为0.88和0.84,敏感性+特异性的伴随差异为6.2%。在准确性方面,该模型大约70%的时间能准确预测正确诊断,相比之下,专家病理学家小组的初始一致率为69%。这些模型中确定的关键参数包括细胞圆形度、Ki67和EGFR表达、核质比、核面积和细胞面积。
这种基于芯片的方法产生的客观数据可用于口腔潜在恶性病变患者的诊断和管理,以及揭示整个口腔上皮发育异常谱系细胞学差异背后新的分子水平见解。