Rodrigo Chaturaka, Eltahla Auda A, Bull Rowena A, Grebely Jason, Dore Gregory J, Applegate Tanya, Page Kimberly, Bruneau Julie, Morris Meghan D, Cox Andrea L, Osburn William, Kim Arthur Y, Schinkel Janke, Shoukry Naglaa H, Lauer Georg M, Maher Lisa, Hellard Margaret, Prins Maria, Estes Chris, Razavi Homie, Lloyd Andrew R, Luciani Fabio
School of Medical Sciences, Faculty of Medicine.
The Kirby Institute, UNSW Australia, Sydney, New South Wales.
J Infect Dis. 2016 Nov 1;214(9):1383-1389. doi: 10.1093/infdis/jiw389. Epub 2016 Aug 28.
Bayesian evolutionary analysis (coalescent analysis) based on genetic sequences has been used to describe the origins and spread of rapidly mutating RNA viruses, such as influenza, Ebola, human immunodeficiency virus (HIV), and hepatitis C virus (HCV).
Full-length subtype 1a and 3a sequences from early HCV infections from the International Collaborative of Incident HIV and Hepatitis C in Injecting Cohorts (InC3), as well as from public databases from a time window of 1977-2012, were used in a coalescent analysis with BEAST software to estimate the origin and progression of the HCV epidemics in Australia and North America. Convergent temporal trends were sought via independent epidemiological modeling.
The epidemic of subtype 3a had more recent origins (around 1950) than subtype 1a (around 1920) in both continents. In both modeling approaches and in both continents, the epidemics underwent exponential growth between 1955 and 1975, which then stabilized in the late 20th century.
Historical events that fuelled the emergence and spread of injecting drug use, such as the advent of intravenous medical therapies and devices, and growth in the heroin trade, as well as population mixing during armed conflicts, were likely drivers for the cross-continental spread of the HCV epidemics.
基于基因序列的贝叶斯进化分析(溯祖分析)已被用于描述流感、埃博拉、人类免疫缺陷病毒(HIV)和丙型肝炎病毒(HCV)等快速变异RNA病毒的起源和传播。
来自注射吸毒人群中HIV和丙型肝炎国际协作组织(InC3)早期HCV感染的全长1a和3a亚型序列,以及来自1977 - 2012年时间窗口公共数据库的序列,被用于使用BEAST软件进行的溯祖分析,以估计澳大利亚和北美的HCV流行的起源和发展。通过独立的流行病学建模寻找趋同的时间趋势。
在两大洲,3a亚型的流行起源(约1950年)比1a亚型(约1920年)更近。在两种建模方法和两大洲中,疫情在1955年至1975年间呈指数增长,然后在20世纪后期趋于稳定。
推动注射吸毒出现和传播的历史事件,如静脉内医疗疗法和设备的出现、海洛因贸易的增长,以及武装冲突期间的人口流动,可能是HCV疫情跨洲传播的驱动因素。