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利用PacBio单分子实时技术测定的从商品肉鸭(家鸭)中分离出的鸟分枝杆菌全基因组序列

Complete Genome Sequence of Mycobacterium avium, Isolated from Commercial Domestic Pekin Ducks (Anas platyrhynchos domestica), Determined Using PacBio Single-Molecule Real-Time Technology.

作者信息

Song Xiao-Heng, Chen Hong-Xi, Zhou Wang-Shu, Wang Jiang-Bo, Liu Ma-Feng, Wang Ming-Shu, Cheng An-Chun, Jia Ren-Yong, Chen Shun, Sun Kun-Feng, Yang Qiao, Wu Ying, Chen Xiao-Yue, Zhu De-Kang

机构信息

Research Center of Avian Diseases, College of Veterinary Medicine of Sichuan Agricultural University, Chengdu, Sichuan, China Key Laboratory of Animal Disease and Human Health of Sichuan Province, Chengdu, Sichuan, China.

Key Laboratory of Animal Disease and Human Health of Sichuan Province, Chengdu, Sichuan, China Institute of Preventive Veterinary Medicine of Sichuan Agricultural University, Chengdu, Sichuan, China.

出版信息

Genome Announc. 2016 Sep 1;4(5):e00769-16. doi: 10.1128/genomeA.00769-16.

DOI:10.1128/genomeA.00769-16
PMID:27587804
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5009961/
Abstract

Mycobacterium avium is an important pathogenic bacterium in birds and has never, to our knowledge, reported to be isolated from domestic ducks. We present here the complete genome sequence of a virulent strain of Mycobacterium avium, isolated from domestic Pekin ducks for the first time, which was determined by PacBio single-molecule real-time technology.

摘要

鸟分枝杆菌是鸟类中的一种重要病原菌,据我们所知,从未有从家鸭中分离出该菌的报道。我们在此展示首次从北京鸭中分离出的一株强毒力鸟分枝杆菌的全基因组序列,该序列由PacBio单分子实时技术测定。

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本文引用的文献

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Assembling large genomes with single-molecule sequencing and locality-sensitive hashing.利用单分子测序和局部敏感哈希组装大型基因组。
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Whole-genome sequencing for comparative genomics and de novo genome assembly.用于比较基因组学和从头基因组组装的全基因组测序。
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The comprehensive antibiotic resistance database.全面抗生素耐药性数据库。
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Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data.非杂交、基于长读长 SMRT 测序数据的完成微生物基因组组装。
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Pathology of mycobacteriosis in birds.鸟类分枝杆菌病的病理学
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