Nguyen Tuan Ngoc, Yeh Chen-Wei, Tsai Po-Chun, Lee Kyoung, Huang Shir-Ly
Institute of Microbiology and Immunology, National Yang-Ming University, Taipei, Taiwan.
Department of Life Sciences, National Central University, Jhongli City, Taoyuan County, Taiwan.
Appl Environ Microbiol. 2016 Oct 27;82(22):6584-6592. doi: 10.1128/AEM.01907-16. Print 2016 Nov 15.
Pseudomonas nitroreducens TX1 is of special interest because of its ability to utilize 0.05% to 20% octylphenol polyethoxylates (OPEO) as a sole source of carbon. In this study, a library containing 30,000 Tn5-insertion mutants of the wild-type strain TX1 was constructed and screened for OPEO utilization, and 93 mutants were found to be unable to grow on OPEO In total, 42 separate disrupted genes were identified, and the proteins encoded by the genes were then classified into various categories, namely, information storage and processing (14.3%), cellular processes and signaling (28.6%), metabolism (35.7%), and unknown proteins (21.4%). The individual deletion of genes encoding isocitrate lyase (aceA), malate synthase (aceB), and glycolate dehydrogenase (glcE) was carried out, and the requirement for aceA and aceB but not glcE confirmed the role of the glyoxylate cycle in OPEO degradation. Furthermore, acetaldehyde dehydrogenase and acetyl-coenzyme A (acetyl-CoA) synthetase activity levels were 13.2- and 2.1-fold higher in TX1 cells grown on OPEO than in TX1 cells grown on succinate, respectively. Growth of the various mutants on different carbon sources was tested, and based on these findings, a mechanism involving exoscission to liberate acetaldehyde from the end of the OPEO chain during degradation is proposed for the breakdown of OPEO IMPORTANCE: Octylphenol polyethoxylates belong to the alkylphenol polyethoxylate (APEO) nonionic surfactant family. Evidence based on the analysis of intermediate metabolites suggested that the primary biodegradation of APEO can be achieved by two possible pathways for the stepwise removal of the C ethoxylate units from the end of the chain. However, direct evidence for these hypotheses is still lacking. In this study, we described the use of transposon mutagenesis to identify genes critical to the catabolism of OPEO by P. nitroreducens TX1. The exoscission of the ethoxylate chain leading to the liberation of acetaldehyde is proposed. Isocitrate lyase and malate synthase in glyoxylate cycle are required in the catabolism of ethoxylated surfactants. Our findings also provide many gene candidates that may help elucidate the mechanisms in stress responses to ethoxylated surfactants by bacteria.
硝基还原假单胞菌TX1因其能够利用0.05%至20%的辛基酚聚乙氧基化物(OPEO)作为唯一碳源而备受关注。在本研究中,构建了一个包含30,000个野生型菌株TX1的Tn5插入突变体文库,并筛选其对OPEO的利用情况,发现有93个突变体无法在OPEO上生长。总共鉴定出42个独立的 disrupted 基因,这些基因编码的蛋白质随后被分类为不同类别,即信息存储与处理(14.3%)、细胞过程与信号传导(28.6%)、代谢(35.7%)和未知蛋白质(21.4%)。对编码异柠檬酸裂合酶(aceA)、苹果酸合酶(aceB)和乙醇酸脱氢酶(glcE)的基因进行了单独缺失,对aceA和aceB而非glcE的需求证实了乙醛酸循环在OPEO降解中的作用。此外,在以OPEO为碳源生长的TX1细胞中,乙醛脱氢酶和乙酰辅酶A(acetyl-CoA)合成酶的活性水平分别比以琥珀酸为碳源生长的TX1细胞高13.2倍和2.1倍。测试了各种突变体在不同碳源上的生长情况,并基于这些发现,提出了一种在降解过程中通过外切作用从OPEO链末端释放乙醛的机制来分解OPEO。重要性:辛基酚聚乙氧基化物属于烷基酚聚乙氧基化物(APEO)非离子表面活性剂家族。基于中间代谢物分析的证据表明,APEO的初级生物降解可以通过两种可能的途径实现,即从链末端逐步去除C乙氧基单元。然而,这些假设仍缺乏直接证据。在本研究中,我们描述了利用转座子诱变来鉴定硝基还原假单胞菌TX1对OPEO分解代谢至关重要的基因。提出了乙氧基链的外切作用导致乙醛释放的过程。乙醛酸循环中的异柠檬酸裂合酶和苹果酸合酶在乙氧基化表面活性剂的分解代谢中是必需的。我们的发现还提供了许多基因候选物,可能有助于阐明细菌对乙氧基化表面活性剂应激反应的机制。