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利用交叉扩增微卫星位点对墨西哥湾琼斯海蚯蚓(多毛纲,西伯加林科)种群结构的研究

Investigation of population structure in Gulf of Mexico Seepiophila jonesi (Polychaeta, Siboglinidae) using cross-amplified microsatellite loci.

作者信息

Huang Chunya, Schaeffer Stephen W, Fisher Charles R, Cowart Dominique A

机构信息

Department of Biology, Pennsylvania State University , University Park , PA , United States.

Department of Biology, Pennsylvania State University, University Park, PA, United States; Current affiliation: Department of Animal Biology, University of Illinois at Urbana-Champaign, Urbana, IL, United States.

出版信息

PeerJ. 2016 Aug 23;4:e2366. doi: 10.7717/peerj.2366. eCollection 2016.

DOI:10.7717/peerj.2366
PMID:27635334
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5012325/
Abstract

BACKGROUND

Vestimentiferan tubeworms are some of the most recognizable fauna found at deep-sea cold seeps, isolated environments where hydrocarbon rich fluids fuel biological communities. Several studies have investigated tubeworm population structure; however, much is still unknown about larval dispersal patterns at Gulf of Mexico (GoM) seeps. As such, researchers have applied microsatellite markers as a measure for documenting the transport of vestimentiferan individuals. In the present study, we investigate the utility of microsatellites to be cross-amplified within the escarpiid clade of seep vestimentiferans, by determining if loci originally developed for Escarpia spp. could be amplified in the GoM seep tubeworm, Seepiophila jonesi. Additionally, we determine if cross-amplified loci can reliably uncover the same signatures of high gene flow seen in a previous investigation of S. jonesi.

METHODS

Seventy-seven S. jonesi individuals were collected from eight seep sites across the upper Louisiana slope (<1,000 m) in the GoM. Forty-eight microsatellite loci that were originally developed for Escarpia laminata (18 loci) and Escarpia southwardae (30 loci) were tested to determine if they were homologous and polymorphic in S. jonesi. Loci found to be both polymorphic and of high quality were used to test for significant population structuring in S. jonesi.

RESULTS

Microsatellite pre-screening identified 13 (27%) of the Escarpia loci were homologous and polymorphic in S. jonesi, revealing that microsatellites can be amplified within the escarpiid clade of vestimentiferans. Our findings uncovered low levels of heterozygosity and a lack of genetic differentiation amongst S. jonesi from various sites and regions, in line with previous investigations that employed species-specific polymorphic loci on S. jonesi individuals retrieved from both the same and different seep sites. The lack of genetic structure identified from these populations supports the presence of significant gene flow via larval dispersal in mixed oceanic currents.

DISCUSSION

The ability to develop "universal" microsatellites reduces the costs associated with these analyses and allows researchers to track and investigate a wider array of taxa, which is particularly useful for organisms living at inaccessible locations such as the deep sea. Our study highlights that non-species specific microsatellites can be amplified across large evolutionary distances and still yield similar findings as species-specific loci. Further, these results show that S. jonesi collected from various localities in the GoM represents a single panmictic population, suggesting that dispersal of lecithotrophic larvae by deep sea currents is sufficient to homogenize populations. These data are consistent with the high levels of gene flow seen in Escarpia spp., which advocates that differences in microhabitats of seep localities lead to variation in biogeography of separate species.

摘要

背景

巨型管虫是深海冷泉中最容易识别的动物之一,冷泉是富含碳氢化合物的流体为生物群落提供能量的孤立环境。多项研究调查了管虫的种群结构;然而,关于墨西哥湾(GoM)冷泉幼虫的扩散模式仍有许多未知之处。因此,研究人员应用微卫星标记来记录巨型管虫个体的迁移情况。在本研究中,我们通过确定最初为埃氏管虫属(Escarpia spp.)开发的基因座是否能在GoM冷泉管虫琼斯嗜泉虫(Seepiophila jonesi)中扩增,来研究微卫星在冷泉巨型管虫的埃氏管虫分支内交叉扩增的效用。此外,我们确定交叉扩增的基因座是否能可靠地揭示在先前对琼斯嗜泉虫的调查中看到的相同的高基因流特征。

方法

从GoM路易斯安那州上坡(<1000米)的八个冷泉地点收集了77只琼斯嗜泉虫个体。测试了最初为薄片埃氏管虫(Escarpia laminata)(18个基因座)和南方埃氏管虫(Escarpia southwardae)(30个基因座)开发的48个微卫星基因座,以确定它们在琼斯嗜泉虫中是否同源且具有多态性。发现既具有多态性又质量高的基因座用于测试琼斯嗜泉虫中显著的种群结构。

结果

微卫星预筛选确定13个(27%)埃氏管虫基因座在琼斯嗜泉虫中是同源且具有多态性的,这表明微卫星可以在巨型管虫的埃氏管虫分支内扩增。我们的研究结果揭示了低水平的杂合性以及来自不同地点和区域的琼斯嗜泉虫之间缺乏遗传分化,这与之前对从相同和不同冷泉地点采集的琼斯嗜泉虫个体使用物种特异性多态性基因座的调查结果一致。从这些种群中未发现遗传结构,这支持了在混合洋流中通过幼虫扩散存在显著基因流的观点。

讨论

开发“通用”微卫星的能力降低了这些分析的成本,并使研究人员能够追踪和研究更广泛的分类群,这对于生活在深海等难以到达地点的生物特别有用。我们的研究强调,非物种特异性微卫星可以在较大的进化距离上扩增,并且仍然能产生与物种特异性基因座相似的结果。此外,这些结果表明,从GoM不同地点采集的琼斯嗜泉虫代表一个单一的随机交配种群,这表明深海洋流对卵黄营养型幼虫的扩散足以使种群同质化。这些数据与在埃氏管虫属中看到的高水平基因流一致,这表明冷泉地点微生境的差异导致不同物种生物地理学的变化。

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