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Draft Genome Sequence of Pseudoalteromonas luteoviolacea HI1, Determined Using Roche 454 and PacBio Single-Molecule Real-Time Hybrid Sequencing.利用罗氏454和PacBio单分子实时杂交测序技术测定的紫色假交替单胞菌HI1基因组草图序列
Genome Announc. 2015 Feb 19;3(1):e01590-14. doi: 10.1128/genomeA.01590-14.
2
The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST).SEED 与利用子系统技术进行快速微生物基因组注释（RAST）。
Nucleic Acids Res. 2014 Jan;42(Database issue):D206-14. doi: 10.1093/nar/gkt1226. Epub 2013 Nov 29.
3
Draft Genome Sequence of Pseudoalteromonas luteoviolacea Strain B (ATCC 29581).紫色假交替单胞菌菌株B（ATCC 29581）的基因组序列草图
Genome Announc. 2013 Feb 28;1(2):e0004813. doi: 10.1128/genomeA.00048-13.
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BioJava: an open-source framework for bioinformatics in 2012.BioJava：2012 年的生物信息学开源框架。
Bioinformatics. 2012 Oct 15;28(20):2693-5. doi: 10.1093/bioinformatics/bts494. Epub 2012 Aug 9.
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antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences.antiSMASH：快速识别、注释和分析细菌和真菌基因组序列中次生代谢产物生物合成基因簇。
Nucleic Acids Res. 2011 Jul;39(Web Server issue):W339-46. doi: 10.1093/nar/gkr466. Epub 2011 Jun 14.
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HMMER web server: interactive sequence similarity searching.HMMER 网页服务器：交互式序列相似性搜索。
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Marine sponges and their microbial symbionts: love and other relationships.海洋海绵及其微生物共生体：爱与其他关系。
Environ Microbiol. 2012 Feb;14(2):335-46. doi: 10.1111/j.1462-2920.2011.02460.x. Epub 2011 Mar 28.
8
Bioactive compound synthetic capacity and ecological significance of marine bacterial genus pseudoalteromonas.海洋假交替单胞菌属的生物活性化合物合成能力及生态意义。
Mar Drugs. 2007 Dec 18;5(4):220-41. doi: 10.3390/md504220.
9
The RAST Server: rapid annotations using subsystems technology.RAST服务器：使用子系统技术进行快速注释。
BMC Genomics. 2008 Feb 8;9:75. doi: 10.1186/1471-2164-9-75.
10
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从夏威夷希洛分离出的海洋海绵共生菌紫色假交替单胞菌IPB1的基因组序列草图

Draft Genome Sequence of Marine Sponge Symbiont Pseudoalteromonas luteoviolacea IPB1, Isolated from Hilo, Hawaii.

作者信息

Sakai-Kawada Francis E, Yakym Christopher J, Helmkampf Martin, Hagiwara Kehau, Ip Courtney G, Antonio Brandi J, Armstrong Ellie, Ulloa Wesley J, Awaya Jonathan D

机构信息

Department of Molecular Biosciences and Bioengineering, University of Hawaii at Manoa, Honolulu, Hawaii, USA

Tropical Conservation Biology and Environmental Science, University of Hawaii at Hilo, Hilo, Hawaii, USA.

出版信息

Genome Announc. 2016 Sep 22;4(5):e01002-16. doi: 10.1128/genomeA.01002-16.

DOI:10.1128/genomeA.01002-16
PMID:27660784
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5034135/
Abstract

We report here the 6.0-Mb draft genome assembly of Pseudoalteromonas luteoviolacea strain IPB1 that was isolated from the Hawaiian marine sponge Iotrochota protea Genome mining complemented with bioassay studies will elucidate secondary metabolite biosynthetic pathways and will help explain the ecological interaction between host sponge and microorganism.

摘要

我们在此报告从夏威夷海棉Iotrochota protea分离出的紫色假交替单胞菌菌株IPB1的6.0兆碱基基因组草图组装。基因组挖掘与生物测定研究相结合，将阐明次级代谢物生物合成途径，并有助于解释宿主海绵与微生物之间的生态相互作用。