San Diego Supercomputer Center, University of California San Diego, La Jolla, CA 92093, USA.
Bioinformatics. 2012 Oct 15;28(20):2693-5. doi: 10.1093/bioinformatics/bts494. Epub 2012 Aug 9.
BioJava is an open-source project for processing of biological data in the Java programming language. We have recently released a new version (3.0.5), which is a major update to the code base that greatly extends its functionality.
BioJava now consists of several independent modules that provide state-of-the-art tools for protein structure comparison, pairwise and multiple sequence alignments, working with DNA and protein sequences, analysis of amino acid properties, detection of protein modifications and prediction of disordered regions in proteins as well as parsers for common file formats using a biologically meaningful data model.
BioJava is an open-source project distributed under the Lesser GPL (LGPL). BioJava can be downloaded from the BioJava website (http://www.biojava.org). BioJava requires Java 1.6 or higher. All inquiries should be directed to the BioJava mailing lists. Details are available at http://biojava.org/wiki/BioJava:MailingLists.
BioJava 是一个用 Java 编程语言处理生物数据的开源项目。我们最近发布了一个新版本（3.0.5），这是对代码库的重大更新，极大地扩展了其功能。
BioJava 现在由几个独立的模块组成，这些模块为蛋白质结构比较、两两和多重序列比对、处理 DNA 和蛋白质序列、分析氨基酸性质、检测蛋白质修饰以及预测蛋白质中的无序区域提供了最先进的工具，以及使用有意义的生物数据模型的常见文件格式的解析器。
BioJava 是一个根据较小通用公共许可证 (LGPL) 分发的开源项目。BioJava 可以从 BioJava 网站 (http://www.biojava.org) 下载。BioJava 需要 Java 1.6 或更高版本。所有查询都应发送到 BioJava 邮件列表。详情请访问 http://biojava.org/wiki/BioJava:MailingLists。
