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Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data.非杂交、基于长读长 SMRT 测序数据的完成微生物基因组组装。
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3
Next generation sequence assembly with AMOS.使用AMOS进行下一代序列组装。
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4
Phylogenetic analysis and fluorescence in situ hybridization detection of archaeal and bacterial endosymbionts in the anaerobic ciliate trimyema compressum.厌氧纤毛虫扁三膜虫中古菌和细菌内共生体的系统发育分析及荧光原位杂交检测
Microb Ecol. 2007 Nov;54(4):627-36. doi: 10.1007/s00248-007-9218-1. Epub 2007 Apr 29.
5
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Nucleic Acids Res. 2006 Jan 1;34(Database issue):D32-6. doi: 10.1093/nar/gkj014.

厌氧纤毛虫扁形三膜虫中细胞内细菌共生体TC1的全基因组序列

Complete Genome Sequence of the Intracellular Bacterial Symbiont TC1 in the Anaerobic Ciliate Trimyema compressum.

作者信息

Shinzato Naoya, Aoyama Hiroaki, Saitoh Seikoh, Nikoh Naruo, Nakano Kazuma, Shimoji Makiko, Shinzato Misuzu, Satou Kazuhito, Teruya Kuniko, Hirano Takashi, Yamada Takanori, Nobu Masaru K, Tamaki Hideyuki, Shirai Yumi, Park Sanghwa, Narihiro Takashi, Liu Wen-Tso, Kamagata Yoichi

机构信息

Tropical Biosphere Research Center, University of the Ryukyus, Nishihara, Okinawa, Japan Bioproduction Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, Ibaraki, Japan

Tropical Biosphere Research Center, University of the Ryukyus, Nishihara, Okinawa, Japan Center for Strategic Research Project, University of the Ryukyus, Nishihara, Okinawa, Japan.

出版信息

Genome Announc. 2016 Sep 22;4(5):e01032-16. doi: 10.1128/genomeA.01032-16.

DOI:10.1128/genomeA.01032-16
PMID:27660797
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5034148/
Abstract

A free-living ciliate, Trimyema compressum, found in anoxic freshwater environments harbors methanogenic archaea and a bacterial symbiont named TC1 in its cytoplasm. Here, we report the complete genome sequence of the TC1 symbiont, consisting of a 1.59-Mb chromosome and a 35.8-kb plasmid, which was determined using the PacBio RSII sequencer.

摘要

在缺氧淡水环境中发现的一种自由生活的纤毛虫——压缩三毛滴虫，其细胞质中含有产甲烷古菌和一种名为TC1的细菌共生体。在此，我们报告了TC1共生体的完整基因组序列，它由一条1.59兆碱基对的染色体和一个35.8千碱基对的质粒组成，该序列是使用PacBio RSII测序仪测定的。