Institute of Chemistry and Biochemistry, Freie Universität Berlin , Takustr. 3, 14195 Berlin, Germany.
Max Delbrück Center for Molecular Medicine in the Helmholtz Association , Robert-Rössle-Str. 10, 13125 Berlin, Germany.
J Am Chem Soc. 2016 Oct 5;138(39):12868-12875. doi: 10.1021/jacs.6b05507. Epub 2016 Sep 27.
Proteins are dynamic molecules that can transiently adopt different conformational states. As the function of the system often depends critically on its conformational state a rigorous understanding of the correlation between structure, energetics and dynamics of the different accessible states is crucial. The biophysical characterization of such processes is, however, challenging as the excited states are often only marginally populated. We show that a combination of X-ray crystallography performed at 100 K as well as at room temperature and EPR spectroscopy on a spin-labeled single crystal allows to correlate the structures of the ground state and a thermally excited state with their thermodynamics using the variant 118R1 of T4 lysozyme as an example. In addition, it is shown that the surrounding solvent can significantly alter the energetic as well as the entropic contribution to the Gibbs free energy without major impact on the structure of both states.
蛋白质是具有动态特性的分子,它们可以暂时采用不同的构象状态。由于系统的功能通常取决于其构象状态,因此严格理解不同可及状态之间的结构、能量和动力学之间的相关性至关重要。然而,由于激发态的存在通常非常微弱,因此对这些过程进行生物物理特性的描述极具挑战性。我们以 T4 溶菌酶的 118R1 变体为例,展示了将 100 K 下的 X 射线晶体学与室温下的 X 射线晶体学以及在自旋标记单晶上的 EPR 光谱学相结合,可用于关联基态和热激发态的结构与其热力学。此外,还表明,周围溶剂可以显著改变两种状态的吉布斯自由能的能量和熵贡献,而对两种状态的结构几乎没有影响。