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非酒精性脂肪性肝炎发病机制中的环状RNA表达模式及环状RNA-微小RNA-信使RNA网络

CircRNA expression pattern and circRNA-miRNA-mRNA network in the pathogenesis of nonalcoholic steatohepatitis.

作者信息

Jin Xi, Feng Chun-Yan, Xiang Zun, Chen Yi-Peng, Li You-Ming

机构信息

Department of Gastroenterology, The First Affiliated Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang, China.

Department of Clinical Medicine, Hangzhou Medical College, Hangzhou, China.

出版信息

Oncotarget. 2016 Oct 11;7(41):66455-66467. doi: 10.18632/oncotarget.12186.

Abstract

The pathogenesis of nonalcoholic steatohepatitis (NASH) is still unclear, where involvement of circRNA is considered for its active role as "miRNA sponge". Therefore, we aimed to investigate the circRNA expression pattern in NASH and further construct the circRNA-miRNA-mRNA network for in-depth mechanism exploration. Briefly, NASH mice model was established by Methionine and choline deficiency (MCD) diet feeding. Liver circRNA and mRNA profile was initially screened by microarray and ensuing qRT-PCR verification was carried out. The overlapped predicted miRNAs as downstream targets of circRNAs and upstream regulators of mRNAs were verified by qRT-PCR and final circRNA-miRNA-mRNA network was constructed. Gene Ontology (GO) and KEGG pathway analysis were further applied to enrich the huge mRNA microarray data. To sum up, there were 69 up and 63 down regulated circRNAs as well as 2760 up and 2465 down regulated mRNAs in NASH group, comparing with control group. Randomly selected 13 of 14 mRNAs and 2 of 8 circRNAs were successfully verified by qRT-PCR. Through predicted overlapped miRNA verification, four circRNA-miRNA-mRNA pathways were constructed, including circRNA_002581-miR-122-Slc1a5, circRNA_002581- miR-122-Plp2, circRNA_002581-miR-122-Cpeb1 and circRNA_007585-miR-326- UCP2. GO and KEGG pathway analysis also enriched specific mRNAs. Therefore, circRNA profile may serve as candidate for NASH diagnosis and circRNA-miRNA -mRNA pathway may provide novel mechanism for NASH.

摘要

非酒精性脂肪性肝炎(NASH)的发病机制仍不清楚,环状RNA(circRNA)因其作为“miRNA海绵”的活跃作用而被认为与之有关。因此,我们旨在研究NASH中circRNA的表达模式,并进一步构建circRNA-miRNA-mRNA网络以深入探索其机制。简而言之,通过蛋氨酸和胆碱缺乏(MCD)饮食喂养建立NASH小鼠模型。首先通过微阵列筛选肝脏circRNA和mRNA谱,随后进行qRT-PCR验证。通过qRT-PCR验证作为circRNA下游靶标和mRNA上游调节因子的重叠预测miRNA,并构建最终的circRNA-miRNA-mRNA网络。进一步应用基因本体论(GO)和KEGG通路分析来富集大量的mRNA微阵列数据。总之,与对照组相比,NASH组中有69个上调和63个下调的circRNA,以及2760个上调和2465个下调的mRNA。通过qRT-PCR成功验证了14个mRNA中的13个和8个circRNA中的2个。通过预测的重叠miRNA验证,构建了四条circRNA-miRNA-mRNA通路,包括circRNA_002581-miR-122-Slc1a5、circRNA_002581-miR-122-Plp2、circRNA_002581-miR-122-Cpeb1和circRNA_007585-miR-326-UCP2。GO和KEGG通路分析也富集了特定的mRNA。因此,circRNA谱可能作为NASH诊断的候选物,而circRNA-miRNA-mRNA通路可能为NASH提供新的机制。

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