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活性共聚过程的动力学与热力学

Kinetics and thermodynamics of living copolymerization processes.

作者信息

Gaspard Pierre

机构信息

Center for Nonlinear Phenomena and Complex Systems, Université Libre de Bruxelles, Code Postal 231, Campus Plaine, 1050 Brussels, Belgium

出版信息

Philos Trans A Math Phys Eng Sci. 2016 Nov 13;374(2080). doi: 10.1098/rsta.2016.0147.

Abstract

Theoretical advances are reported on the kinetics and thermodynamics of free and template-directed living copolymerizations. Until recently, the kinetic theory of these processes had only been established in the fully irreversible regime, in which the attachment rates are only considered. However, the entropy production is infinite in this regime and the approach to thermodynamic equilibrium cannot be investigated. For this purpose, the detachment rates should also be included. Inspite of this complication, the kinetics can be exactly solved in the regimes of steady growth and depolymerization. In this way, analytical expressions are obtained for the mean growth velocity, the statistical properties of the copolymer sequences, as well as the thermodynamic entropy production. The results apply to DNA replication, transcription and translation, allowing us to understand important aspects of molecular evolution.This article is part of the themed issue 'Multiscale modelling at the physics-chemistry-biology interface'.

摘要

本文报道了关于自由及模板导向活性共聚合反应动力学和热力学的理论进展。直到最近,这些过程的动力学理论仅在完全不可逆的情况下建立,其中仅考虑了附着速率。然而,在这种情况下熵产生是无限的,并且无法研究其向热力学平衡的趋近过程。为此,还应考虑脱离速率。尽管存在这种复杂性,但在稳定增长和解聚的情况下动力学可以精确求解。通过这种方式,得到了平均增长速度、共聚物序列的统计性质以及热力学熵产生的解析表达式。这些结果适用于DNA复制、转录和翻译,使我们能够理解分子进化的重要方面。本文是主题为“物理 - 化学 - 生物学界面的多尺度建模”特刊的一部分。

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