• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

酵母DNA测序文库的制备

Preparation of Yeast DNA Sequencing Libraries.

作者信息

Schwartz Katja, Sherlock Gavin

机构信息

Department of Genetics, Stanford University Medical School, Stanford, California 94305-5120.

出版信息

Cold Spring Harb Protoc. 2016 Oct 3;2016(10):2016/10/pdb.prot088930. doi: 10.1101/pdb.prot088930.

DOI:10.1101/pdb.prot088930
PMID:27698239
Abstract

This protocol provides a detailed description of how to prepare a DNA sequencing library from yeast genomic DNA for use with the Illumina sequencing platform. This method does not require purchase of Illumina kits for library preparation but instead employs specific reagents purchased largely from New England BioLabs, which significantly reduces the cost of library preparation. Although we assume here that users intend to generate libraries with ∼400-bp insert sizes for paired-end sequencing, it is relatively straightforward to modify the shearing and size selection steps for longer or shorter inserts.

摘要

本方案详细描述了如何从酵母基因组DNA制备DNA测序文库,以用于Illumina测序平台。此方法不需要购买Illumina文库制备试剂盒,而是使用主要从新英格兰生物实验室购买的特定试剂,这显著降低了文库制备成本。尽管我们在此假设用户打算生成用于双端测序的插入片段大小约为400bp的文库,但对于更长或更短的插入片段,修改剪切和大小选择步骤相对简单。

相似文献

1
Preparation of Yeast DNA Sequencing Libraries.酵母DNA测序文库的制备
Cold Spring Harb Protoc. 2016 Oct 3;2016(10):2016/10/pdb.prot088930. doi: 10.1101/pdb.prot088930.
2
Optimization of enzymatic fragmentation is crucial to maximize genome coverage: a comparison of library preparation methods for Illumina sequencing.优化酶切片段化对于最大化基因组覆盖度至关重要:Illumina 测序文库制备方法的比较。
BMC Genomics. 2022 Feb 1;23(1):92. doi: 10.1186/s12864-022-08316-y.
3
Preparation of an 8-kb Mate-Pair Library for Illumina Sequencing.用于Illumina测序的8kb配对末端文库的制备。
Cold Spring Harb Protoc. 2017 Apr 3;2017(4):pdb.prot094664. doi: 10.1101/pdb.prot094664.
4
Optimized Illumina PCR-free library preparation for bacterial whole genome sequencing and analysis of factors influencing de novo assembly.用于细菌全基因组测序的优化Illumina无PCR文库制备及影响从头组装的因素分析
BMC Res Notes. 2016 May 12;9:269. doi: 10.1186/s13104-016-2072-9.
5
Hackflex: low-cost, high-throughput, Illumina Nextera Flex library construction.Hackflex:低成本、高通量、Illumina Nextera Flex 文库构建。
Microb Genom. 2022 Jan;8(1). doi: 10.1099/mgen.0.000744.
6
Sequencing Library Preparation from Degraded Samples for Non-illumina Sequencing Platforms.用于非Illumina测序平台的降解样本测序文库制备
Methods Mol Biol. 2019;1963:85-92. doi: 10.1007/978-1-4939-9176-1_10.
7
Illumina sequencing library preparation for highly multiplexed target capture and sequencing.用于高度多重目标捕获和测序的Illumina测序文库制备。
Cold Spring Harb Protoc. 2010 Jun;2010(6):pdb.prot5448. doi: 10.1101/pdb.prot5448.
8
A novel ultra high-throughput 16S rRNA gene amplicon sequencing library preparation method for the Illumina HiSeq platform.一种新型的超高通量 16S rRNA 基因扩增子测序文库制备方法,适用于 Illumina HiSeq 平台。
Microbiome. 2017 Jul 6;5(1):68. doi: 10.1186/s40168-017-0279-1.
9
Preparation of a 3-kb Mate-Pair Library for Illumina Sequencing.用于Illumina测序的3kb配对末端文库的制备。
Cold Spring Harb Protoc. 2017 Apr 3;2017(4):pdb.prot094656. doi: 10.1101/pdb.prot094656.
10
Optimization and cost-saving in tagmentation-based mate-pair library preparation and sequencing.基于转座酶标签法的配对文库制备和测序中的优化与成本节约
Biotechniques. 2015 May 1;58(5):253-7. doi: 10.2144/000114288. eCollection 2015 May.

引用本文的文献

1
The rate of spontaneous mutations in yeast deficient for MutSβ function.酵母 MutSβ 功能缺失突变体的自发突变率。
G3 (Bethesda). 2023 Mar 9;13(3). doi: 10.1093/g3journal/jkac330.
2
Phylogenetic and genomic analyses of two new species of (, ) from Central China.来自中国中部的两种(,)新物种的系统发育和基因组分析。
Front Microbiol. 2022 Oct 13;13:1019599. doi: 10.3389/fmicb.2022.1019599. eCollection 2022.
3
Whole-Genome Sequencing and Annotation of the Yeast Reveals Important Insights about Its Adaptation to the Vineyard Environment.
酵母的全基因组测序与注释揭示了其对葡萄园环境适应性的重要见解。
J Fungi (Basel). 2022 Jan 5;8(1):52. doi: 10.3390/jof8010052.
4
sp. nov., a Novel Apiculate Yeast Species From Patagonian Forests That Lacks the Typical Genomic Domestication Signatures for Fermentative Environments.新种,一种来自巴塔哥尼亚森林的新型具尖酵母物种,其缺乏发酵环境典型的基因组驯化特征。
Front Microbiol. 2021 Jul 21;12:679894. doi: 10.3389/fmicb.2021.679894. eCollection 2021.
5
sp. nov., the First Member of a Novel Taphrinomycotina Lineage.新物种,一个新的茶渍菌纲谱系的首个成员。
Microorganisms. 2021 Feb 2;9(2):301. doi: 10.3390/microorganisms9020301.