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复杂反应网络的量子化学模型的不确定性量化。

Uncertainty quantification for quantum chemical models of complex reaction networks.

机构信息

Laboratory of Physical Chemistry, ETH Zürich, Zürich, Switzerland.

出版信息

Faraday Discuss. 2016 Dec 22;195:497-520. doi: 10.1039/c6fd00144k.

DOI:10.1039/c6fd00144k
PMID:27730243
Abstract

For the quantitative understanding of complex chemical reaction mechanisms, it is, in general, necessary to accurately determine the corresponding free energy surface and to solve the resulting continuous-time reaction rate equations for a continuous state space. For a general (complex) reaction network, it is computationally hard to fulfill these two requirements. However, it is possible to approximately address these challenges in a physically consistent way. On the one hand, it may be sufficient to consider approximate free energies if a reliable uncertainty measure can be provided. On the other hand, a highly resolved time evolution may not be necessary to still determine quantitative fluxes in a reaction network if one is interested in specific time scales. In this paper, we present discrete-time kinetic simulations in discrete state space taking free energy uncertainties into account. The method builds upon thermo-chemical data obtained from electronic structure calculations in a condensed-phase model. Our kinetic approach supports the analysis of general reaction networks spanning multiple time scales, which is here demonstrated for the example of the formose reaction. An important application of our approach is the detection of regions in a reaction network which require further investigation, given the uncertainties introduced by both approximate electronic structure methods and kinetic models. Such cases can then be studied in greater detail with more sophisticated first-principles calculations and kinetic simulations.

摘要

为了定量理解复杂化学反应机制,通常需要准确确定相应的自由能面,并求解连续状态空间的连续时间反应速率方程。对于一般(复杂)的反应网络,在计算上很难满足这两个要求。然而,可以以物理一致的方式近似解决这些挑战。一方面,如果能够提供可靠的不确定性度量,则可以考虑近似自由能。另一方面,如果对特定时间尺度感兴趣,则在反应网络中仍然确定定量通量时,可能不需要高度解析的时间演化。在本文中,我们提出了在离散状态空间中考虑自由能不确定性的离散时间动力学模拟。该方法基于在凝聚相模型中从电子结构计算获得的热化学数据。我们的动力学方法支持跨越多个时间尺度的一般反应网络的分析,这里以福莫塞反应为例进行了演示。我们方法的一个重要应用是检测反应网络中需要进一步研究的区域,这是由近似电子结构方法和动力学模型引入的不确定性引起的。在这种情况下,可以使用更复杂的第一性原理计算和动力学模拟更详细地研究这些情况。

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