Suppr超能文献

化学反应网络的不确定性感知第一性原理探索

Uncertainty-Aware First-Principles Exploration of Chemical Reaction Networks.

作者信息

Bensberg Moritz, Reiher Markus

机构信息

Department of Chemistry and Applied Biosciences, ETH Zürich, Vladimir-Prelog-Weg 2, 8093 Zürich, Switzerland.

出版信息

J Phys Chem A. 2024 Jun 6;128(22):4532-4547. doi: 10.1021/acs.jpca.3c08386. Epub 2024 May 24.

Abstract

Exploring large chemical reaction networks with automated exploration approaches and accurate quantum chemical methods can require prohibitively large computational resources. Here, we present an automated exploration approach that focuses on the kinetically relevant part of the reaction network by interweaving (i) large-scale exploration of chemical reactions, (ii) identification of kinetically relevant parts of the reaction network through microkinetic modeling, (iii) quantification and propagation of uncertainties, and (iv) reaction network refinement. Such an uncertainty-aware exploration of kinetically relevant parts of a reaction network with automated accuracy improvement has not been demonstrated before in a fully quantum mechanical approach. Uncertainties are identified by local or global sensitivity analysis. The network is refined in a rolling fashion during the exploration. Moreover, the uncertainties are considered during kinetically steering of a rolling reaction network exploration. We demonstrate our approach for Eschenmoser-Claisen rearrangement reactions. The sensitivity analysis identifies that only a small number of reactions and compounds are essential for describing the kinetics reliably, resulting in efficient explorations without sacrificing accuracy and without requiring prior knowledge about the chemistry unfolding.

摘要

使用自动化探索方法和精确的量子化学方法来探索大型化学反应网络可能需要极其庞大的计算资源。在此,我们提出一种自动化探索方法,该方法通过交织以下内容来聚焦反应网络中与动力学相关的部分:(i)化学反应的大规模探索,(ii)通过微观动力学建模识别反应网络中与动力学相关的部分,(iii)不确定性的量化与传播,以及(iv)反应网络的优化。在完全量子力学方法中,此前尚未展示过这种对反应网络中与动力学相关部分进行具有自动精度提升的不确定性感知探索。不确定性通过局部或全局敏感性分析来识别。在探索过程中以滚动方式对网络进行优化。此外,在滚动反应网络探索的动力学引导过程中会考虑不确定性。我们展示了针对埃申莫瑟 - 克莱森重排反应的方法。敏感性分析表明,仅少量反应和化合物对于可靠描述动力学至关重要,从而实现了高效探索,既不牺牲准确性,也无需关于正在发生的化学反应的先验知识。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/85c5/11163430/2cd5a97b7ac6/jp3c08386_0001.jpg

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验