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直翅目螳蛉亚目科的首个完整线粒体基因组及其对鳞翅目系统发育的启示。

The first complete mitochondrial genome for the subfamily Limacodidae and implications for the higher phylogeny of Lepidoptera.

机构信息

Jiangsu Key Laboratory for Bioresources of Saline Soils, Jiangsu Synthetic Innovation Center for Coastal Bio-agriculture, Jiangsu Provincial Key Laboratory of Coastal Wetland Bioresources and Environmental Protection, School of Ocean and Biological Engineering, Yancheng Teachers University, Yancheng 224051, P. R. China.

出版信息

Sci Rep. 2016 Oct 21;6:35878. doi: 10.1038/srep35878.

Abstract

The mitochondrial genome (mitogenome) provides important information for understanding molecular evolution and phylogeny. To determine the systematic status of the family Limacodidae within Lepidoptera, we infer a phylogenetic hypothesis based on the complete mitogenome of Monema flavescens (Lepidoptera: Limacodidae). The mitogenome of M. flavescens is 15,396 base pairs (bp), and includes 13 protein-coding genes (PCGs), two ribosomal RNA (rRNA) genes, 22 transfer RNA (tRNA) genes, and a control region (CR). The AT skew of this mitogenome is slightly negative and the nucleotide composition is also biased towards A + T nucleotides (80.5%). All PCGs are initiated by ATN codons, except for the cytochrome c oxidase subunit 1 (cox1) gene, which is initiated by CGA. All tRNAs display the typical clover-leaf structure characteristic of mitochondrial tRNAs, with the exception of trnS1 (AGN). The mitogenome CR is 401 bp and consists of several features common to Lepidoptera. Phylogenetic analysis using Bayesian Inference (BI) and Maximum Likelihood (ML) based on nucleotide and amino acid sequences of 13 mitochondrial PCGs indicates that M. flavescens belongs to Zygaenoidea. We obtain a well-supported phylogenetic tree consisting of Yponomeutoidea + (Tortricoidea + Zygaenoidea + (Papilionoidea + (Pyraloidea + (Noctuoidea + (Geometroidea + Bombycoidea))))).

摘要

线粒体基因组(mitogenome)为理解分子进化和系统发育提供了重要信息。为了确定鳞翅目Limacodidae 科的系统地位,我们基于 Monema flavescens 的完整线粒体基因组推断了一个系统发育假说(鳞翅目:Limacodidae)。M. flavescens 的线粒体基因组为 15396 个碱基对(bp),包括 13 个蛋白质编码基因(PCGs)、两个核糖体 RNA(rRNA)基因、22 个转移 RNA(tRNA)基因和一个控制区(CR)。该线粒体基因组的 AT 倾斜略为负值,核苷酸组成也偏向 A+T 核苷酸(80.5%)。所有 PCGs 均以 ATN 密码子起始,除细胞色素 c 氧化酶亚基 1(cox1)基因外,cox1 基因以 CGA 起始。所有 tRNA 均显示出与线粒体 tRNA 典型的三叶草结构特征,除 trnS1(AGN)外。线粒体基因组 CR 为 401bp,包含鳞翅目共有的几个特征。基于 13 个线粒体 PCGs 的核苷酸和氨基酸序列进行的贝叶斯推断(BI)和最大似然(ML)分析表明,M. flavescens 属于 Zygaenoidea。我们得到了一个支持度较高的系统发育树,其中包含 Yponomeutoidea+(Tortricoidea+Zygaenoidea+(Papilionoidea+(Pyraloidea+(Noctuoidea+(Geometroidea+Bombycoidea))))。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c44a/5073316/0c6626cead93/srep35878-f1.jpg

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