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长尾黄裳凤蝶(鳞翅目,裳凤蝶科)线粒体基因组全序列及其系统发育意义。

The complete mitochondrial genome of Chibiraga houshuaii (Lepidoptera, Limacodidae) and its phylogenetic implications.

机构信息

Molecular Diagnostic Research Center, Guizhou University of Traditional Chinese Medicine, Guiyang, 550025, China.

出版信息

Sci Rep. 2024 Mar 25;14(1):7009. doi: 10.1038/s41598-024-57709-4.

Abstract

Chibiraga is a mall East Asian genus in the family Limacodidae (slug-moths). The latter includes many agricultural pests. Mitochondrial genome analysis is an important tool for studying insect molecular identification and phylogenetics. However, there are very few mitogenome sequences available for Limacodidae species, and none for the genus Chibiraga at all. To explore the mitogenome features of Chibiraga and verify its phylogenetic position, the complete mitogenome of Chibiraga houshuaii was sequenced and annotated. The complete 15,487 bp genome encoded 37 mitochondrial genes, including 13 protein-coding genes (PCGs), 22 transfer RNA (tRNA) genes, two ribosomal RNA (rRNA) genes, and a control region (CR). Most of the PCGs had typical ATN start codons and terminated with TAA or a single T residue. UUA (Leu2), AUU (Ile), UUU (Phe), AUA (Met) and AAU (Asn) were the five most frequently used codons. All tRNAs were folded into cloverleaf secondary structure, except for trnS1, which lacked the DHU arm. Phylogenetic analyses within the superfamily Zygaenoidea were performed based on multiple datasets from mitochondrial genes. The results showed that the families Phaudidae, Limacodidae and Zygaenidae were respectively recovered as monophyly; C. houshuaii was clustered in a clade with nettle type larvae in Limacodidae.

摘要

Chibiraga 是鳞翅目 Limacodidae (木蠹蛾科)中的一个东亚属。后者包括许多农业害虫。线粒体基因组分析是研究昆虫分子鉴定和系统发育的重要工具。然而,鳞翅目物种的线粒体基因组序列非常少,而 Chibiraga 属根本没有。为了探索 Chibiraga 的线粒体基因组特征并验证其系统发育地位,我们对 Chibiraga houshuaii 的完整线粒体基因组进行了测序和注释。完整的 15487bp 基因组编码了 37 个线粒体基因,包括 13 个蛋白质编码基因(PCGs)、22 个转移 RNA(tRNA)基因、两个核糖体 RNA(rRNA)基因和一个控制区(CR)。大多数 PCGs 具有典型的 ATN 起始密码子,并以 TAA 或单个 T 残基终止。UUA(亮氨酸 2)、AUU(异亮氨酸)、UUU(苯丙氨酸)、AUA(甲硫氨酸)和 AAU(天冬酰胺)是使用频率最高的五个密码子。除了 trnS1 缺乏 DHU 臂外,所有 tRNA 都折叠成三叶形二级结构。基于来自线粒体基因的多个数据集,在 Zygaenoidea 超科内进行了系统发育分析。结果表明,Phaudidae、Limacodidae 和 Zygaenidae 三个科分别为单系群;C. houshuaii 与 Limacodidae 中的荨麻型幼虫聚类在一起。

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