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亚铁超氧化物还原酶超氧化物加合物的电子异构形式及紫外可见吸收光谱的多组态和密度泛函理论分析

Multiconfigurational and DFT analyses of the electromeric formulation and UV-vis absorption spectra of the superoxide adduct of ferrous superoxide reductase.

作者信息

Attia Amr A A, Cioloboc Daniela, Lupan Alexandru, Silaghi-Dumitrescu Radu

机构信息

Department of Chemistry, Faculty of Chemistry and Chemical Engineering, Babeş-Bolyai University, Cluj-Napoca, Romania.

Department of Chemistry, University of Texas at San Antonio, San Antonio, TX 78249, United States.

出版信息

J Inorg Biochem. 2016 Dec;165:49-53. doi: 10.1016/j.jinorgbio.2016.09.017. Epub 2016 Sep 30.

DOI:10.1016/j.jinorgbio.2016.09.017
PMID:27768962
Abstract

The putative initial adduct of ferrous superoxide reductase (SOR) with superoxide has been alternatively formulated as ferric-peroxo or ferrous-superoxo. The ~600-nm UV-vis absorption band proposed to be assigned to this adduct (either as sole intermediate in the SOR catalytic cycle, or as one of the two intermediates) has recently been interpreted as due to a ligand-to-metal charge transfer, involving thiolate and superoxide in a ferrous complex, contrary to an alternative assignment as a predominantly cysteine thiolate-to-ferric charge transfer in a ferric-peroxo electromer. In an attempt to clarify the electromeric formulation of this adduct, we report a computational study using a multiconfigurational complete active space self-consistent field (MC-CASSCF) wave function approach as well as modelling the UV-vis absorption spectra with time-dependent density functional theory (TD-DFT). The MC-CASSCF calculations disclose a weak interaction between iron and the dioxygenic ligand and a dominant configuration with an essentially ferrous-superoxo character. The computed UV-vis absorption spectra reveal a marked dependence on the choice of density functional - both in terms of location of bands and in terms of orbital contributors. For the main band in the visible region, besides the recently reported thiolate-to-superoxide charge transfer, a more salient, and less functional-dependent, feature is a thiolate-to-ferric iron charge transfer, consistent with a ferric-peroxo electromer. By contrast, the computed UV-vis spectra of a ferric-hydroperoxo SOR model match distinctly better (and with no qualitative dependence on the DFT methodology) the 600-nm band as due to a mainly thiolate-to-ferric character - supporting the assignment of the SOR "600-nm intermediate" as a S=5/2 ferric-hydroperoxo species.

摘要

亚铁超氧化物还原酶(SOR)与超氧化物的假定初始加合物,曾被表述为铁-过氧或亚铁-超氧形式。曾被认为归属于该加合物的~600纳米紫外-可见吸收带(要么作为SOR催化循环中的唯一中间体,要么作为两种中间体之一),最近被解释为源于配体-金属电荷转移,涉及亚铁配合物中的硫醇盐和超氧化物,这与另一种将其指定为铁-过氧异构体中主要的半胱氨酸硫醇盐-铁电荷转移的观点相反。为了阐明该加合物的异构体形式,我们报告了一项计算研究,使用多组态完全活性空间自洽场(MC-CASSCF)波函数方法,并用时变密度泛函理论(TD-DFT)对紫外-可见吸收光谱进行建模。MC-CASSCF计算揭示了铁与双氧配体之间的弱相互作用以及具有基本亚铁-超氧特征的主导构型。计算得到的紫外-可见吸收光谱显示出对密度泛函选择的显著依赖性——无论是在谱带位置还是轨道贡献方面。对于可见光区域的主要谱带,除了最近报道的硫醇盐-超氧化物电荷转移外,一个更显著且对泛函依赖性较小的特征是硫醇盐-铁电荷转移,这与铁-过氧异构体一致。相比之下,铁-氢过氧SOR模型的计算紫外-可见光谱与600纳米谱带的匹配明显更好(且对DFT方法没有定性依赖性),该谱带主要具有硫醇盐-铁特征——支持将SOR“600纳米中间体”指定为S = 5/2铁-氢过氧物种。

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