• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

混合水合物成核的证据支持结晶漏斗模型。

Evidence from mixed hydrate nucleation for a funnel model of crystallization.

作者信息

Hall Kyle Wm, Carpendale Sheelagh, Kusalik Peter G

机构信息

Department of Chemistry, University of Calgary, Calgary, AB, Canada T2N 1N4.

Department of Computer Science, University of Calgary, Calgary, AB, Canada T2N 1N4.

出版信息

Proc Natl Acad Sci U S A. 2016 Oct 25;113(43):12041-12046. doi: 10.1073/pnas.1610437113. Epub 2016 Oct 6.

DOI:10.1073/pnas.1610437113
PMID:27790987
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5087014/
Abstract

The molecular-level details of crystallization remain unclear for many systems. Previous work has speculated on the phenomenological similarities between molecular crystallization and protein folding. Here we demonstrate that molecular crystallization can involve funnel-shaped potential energy landscapes through a detailed analysis of mixed gas hydrate nucleation, a prototypical multicomponent crystallization process. Through this, we contribute both: (i) a powerful conceptual framework for exploring and rationalizing molecular crystallization, and (ii) an explanation of phenomenological similarities between protein folding and crystallization. Such funnel-shaped potential energy landscapes may be typical of broad classes of molecular ordering processes, and can provide a new perspective for both studying and understanding these processes.

摘要

对于许多体系而言,结晶在分子层面的细节仍不明确。此前的研究推测了分子结晶与蛋白质折叠之间的现象学相似性。在此,我们通过对混合气体水合物成核这一典型的多组分结晶过程进行详细分析,证明分子结晶可能涉及漏斗状的势能面。借此,我们做出了两方面贡献:(i)为探索和阐释分子结晶提供了一个强有力的概念框架;(ii)解释了蛋白质折叠与结晶之间的现象学相似性。这种漏斗状的势能面可能是广泛的分子有序过程所共有的特征,可为研究和理解这些过程提供新的视角。

相似文献

1
Evidence from mixed hydrate nucleation for a funnel model of crystallization.混合水合物成核的证据支持结晶漏斗模型。
Proc Natl Acad Sci U S A. 2016 Oct 25;113(43):12041-12046. doi: 10.1073/pnas.1610437113. Epub 2016 Oct 6.
2
Reaction coordinate of incipient methane clathrate hydrate nucleation.初始甲烷笼形水合物成核的反应坐标。
J Phys Chem B. 2014 Nov 20;118(46):13236-43. doi: 10.1021/jp507959q. Epub 2014 Nov 10.
3
Characterizing key features in the formation of ice and gas hydrate systems.表征冰和气体水合物系统形成过程中的关键特征。
Philos Trans A Math Phys Eng Sci. 2019 Jun 3;377(2146):20180167. doi: 10.1098/rsta.2018.0167.
4
Characterization of nucleation of methane hydrate crystals: Interfacial theory and molecular simulation.甲烷水合物晶体成核的特性:界面理论与分子模拟。
J Colloid Interface Sci. 2019 Dec 1;557:556-567. doi: 10.1016/j.jcis.2019.09.056. Epub 2019 Sep 17.
5
Molecular dynamics simulation of the intercalation behaviors of methane hydrate in montmorillonite.蒙脱石中甲烷水合物插层行为的分子动力学模拟
J Mol Model. 2014 Jun;20(6):2311. doi: 10.1007/s00894-014-2311-8. Epub 2014 Jun 8.
6
The cages, dynamics, and structuring of incipient methane clathrate hydrates.初生甲烷包合物水合物的笼子、动力学和结构。
Phys Chem Chem Phys. 2011 Nov 28;13(44):19951-9. doi: 10.1039/c1cp21899a. Epub 2011 Oct 14.
7
The clathrate hydrate process for post and pre-combustion capture of carbon dioxide.用于燃烧后和燃烧前捕获二氧化碳的笼形水合物工艺。
J Hazard Mater. 2007 Nov 19;149(3):625-9. doi: 10.1016/j.jhazmat.2007.06.086. Epub 2007 Jun 29.
8
Search for memory effects in methane hydrate: structure of water before hydrate formation and after hydrate decomposition.探索甲烷水合物中的记忆效应:水合物形成前和水合物分解后水的结构。
J Chem Phys. 2005 Oct 22;123(16):164507. doi: 10.1063/1.2074927.
9
Nonequilibrium adiabatic molecular dynamics simulations of methane clathrate hydrate decomposition.非平衡绝热分子动力学模拟甲烷笼型水合物分解。
J Chem Phys. 2010 Apr 14;132(14):144703. doi: 10.1063/1.3382341.
10
Inhibition of methane and natural gas hydrate formation by altering the structure of water with amino acids.用氨基酸改变水的结构抑制甲烷和天然气水合物的形成。
Sci Rep. 2016 Aug 16;6:31582. doi: 10.1038/srep31582.

引用本文的文献

1
Inhibition of Tetrahydrofuran Hydrate Formation in the Presence of Polyol-Modified Glass Surfaces.在多元醇改性玻璃表面存在下对四氢呋喃水合物形成的抑制作用。
Energy Fuels. 2017 Aug 17;31(8):7816-7823. doi: 10.1021/acs.energyfuels.7b00666. Epub 2017 Jul 7.
2
Double Life of Methanol: Experimental Studies and Nonequilibrium Molecular-Dynamics Simulation of Methanol Effects on Methane-Hydrate Nucleation.甲醇的双重作用:甲醇对甲烷水合物成核影响的实验研究与非平衡分子动力学模拟
J Phys Chem C Nanomater Interfaces. 2022 Apr 7;126(13):6075-6081. doi: 10.1021/acs.jpcc.2c00329. Epub 2022 Mar 24.
3
Reduced phase stability and faster formation/dissociation kinetics in confined methane hydrate.受限甲烷水合物中相稳定性降低及形成/解离动力学加快。
Proc Natl Acad Sci U S A. 2021 Apr 20;118(16). doi: 10.1073/pnas.2024025118.
4
Unraveling nucleation pathway in methane clathrate formation.揭示甲烷水合物形成中的成核途径。
Proc Natl Acad Sci U S A. 2020 Oct 6;117(40):24701-24708. doi: 10.1073/pnas.2011755117. Epub 2020 Sep 21.
5
Rate Prediction for Homogeneous Nucleation of Methane Hydrate at Moderate Supersaturation Using Transition Interface Sampling.利用过渡态界面采样法预测甲烷水合物在中等过饱和度下的均相成核速率。
J Phys Chem B. 2020 Sep 17;124(37):8099-8109. doi: 10.1021/acs.jpcb.0c04582. Epub 2020 Sep 8.
6
A multi-channel light scattering instrument utilized for monitoring protein aggregation and liquid dense cluster formation.一种用于监测蛋白质聚集和液体致密簇形成的多通道光散射仪器。
Heliyon. 2019 Dec 13;5(12):e03016. doi: 10.1016/j.heliyon.2019.e03016. eCollection 2019 Dec.
7
Unbiased atomistic insight in the competing nucleation mechanisms of methane hydrates.在甲烷水合物的竞争成核机制中获得无偏的原子级洞察力。
Proc Natl Acad Sci U S A. 2019 Sep 24;116(39):19305-19310. doi: 10.1073/pnas.1906502116. Epub 2019 Sep 9.
8
Characterizing key features in the formation of ice and gas hydrate systems.表征冰和气体水合物系统形成过程中的关键特征。
Philos Trans A Math Phys Eng Sci. 2019 Jun 3;377(2146):20180167. doi: 10.1098/rsta.2018.0167.

本文引用的文献

1
Crystal Nucleation in Liquids: Open Questions and Future Challenges in Molecular Dynamics Simulations.液体中的晶体成核:分子动力学模拟中的未解决问题与未来挑战
Chem Rev. 2016 Jun 22;116(12):7078-116. doi: 10.1021/acs.chemrev.5b00744. Epub 2016 May 26.
2
Molecular dynamics study on the nucleation of methane + tetrahydrofuran mixed guest hydrate.甲烷+四氢呋喃混合客体水合物成核的分子动力学研究
Phys Chem Chem Phys. 2016 Apr 21;18(15):9935-47. doi: 10.1039/c5cp06419h. Epub 2016 Jan 11.
3
Homogeneous Nucleation of Methane Hydrate in Microsecond Molecular Dynamics Simulations.微秒级分子动力学模拟中甲烷水合物的均相成核
J Phys Chem Lett. 2012 Oct 18;3(20):2942-7. doi: 10.1021/jz3012113. Epub 2012 Sep 27.
4
Direct calculation of ice homogeneous nucleation rate for a molecular model of water.针对水分子模型直接计算冰的均匀成核速率。
Proc Natl Acad Sci U S A. 2015 Aug 25;112(34):10582-8. doi: 10.1073/pnas.1509267112. Epub 2015 Aug 3.
5
Microcanonical molecular simulations of methane hydrate nucleation and growth: evidence that direct nucleation to sI hydrate is among the multiple nucleation pathways.甲烷水合物成核与生长的微正则分子模拟:直接成核生成I型水合物是多种成核途径之一的证据。
Phys Chem Chem Phys. 2015 Apr 14;17(14):8870-6. doi: 10.1039/c5cp00098j. Epub 2015 Mar 6.
6
Reaction coordinate of incipient methane clathrate hydrate nucleation.初始甲烷笼形水合物成核的反应坐标。
J Phys Chem B. 2014 Nov 20;118(46):13236-43. doi: 10.1021/jp507959q. Epub 2014 Nov 10.
7
Determining the phase diagram of water from direct coexistence simulations: the phase diagram of the TIP4P/2005 model revisited.从直接共存模拟确定水的相图:重新考察 TIP4P/2005 模型的相图。
J Chem Phys. 2013 Oct 21;139(15):154505. doi: 10.1063/1.4824627.
8
The protein-folding problem, 50 years on.蛋白质折叠问题:50 年的探索
Science. 2012 Nov 23;338(6110):1042-6. doi: 10.1126/science.1219021.
9
Fundamentals and applications of gas hydrates.天然气水合物的基础与应用。
Annu Rev Chem Biomol Eng. 2011;2:237-57. doi: 10.1146/annurev-chembioeng-061010-114152.
10
Structural transformation in supercooled water controls the crystallization rate of ice.过冷水的结构相变控制冰的结晶速率。
Nature. 2011 Nov 23;479(7374):506-8. doi: 10.1038/nature10586.