Suppr超能文献

方解石生物矿化模板的纳米级化学:对骨骼组成和成核的影响

Nanometer-Scale Chemistry of a Calcite Biomineralization Template: Implications for Skeletal Composition and Nucleation.

作者信息

Branson Oscar, Bonnin Elisa A, Perea Daniel E, Spero Howard J, Zhu Zihua, Winters Maria, Hönisch Bärbel, Russell Ann D, Fehrenbacher Jennifer S, Gagnon Alexander C

机构信息

Department of Earth and Planetary Sciences, University of California, Davis, CA 95616;

School of Oceanography, University of Washington, Seattle, WA 98195.

出版信息

Proc Natl Acad Sci U S A. 2016 Nov 15;113(46):12934-12939. doi: 10.1073/pnas.1522864113. Epub 2016 Oct 28.

Abstract

Plankton, corals, and other organisms produce calcium carbonate skeletons that are integral to their survival, form a key component of the global carbon cycle, and record an archive of past oceanographic conditions in their geochemistry. A key aspect of the formation of these biominerals is the interaction between organic templating structures and mineral precipitation processes. Laboratory-based studies have shown that these atomic-scale processes can profoundly influence the architecture and composition of minerals, but their importance in calcifying organisms is poorly understood because it is difficult to measure the chemistry of in vivo biomineral interfaces at spatially relevant scales. Understanding the role of templates in biomineral nucleation, and their importance in skeletal geochemistry requires an integrated, multiscale approach, which can place atom-scale observations of organic-mineral interfaces within a broader structural and geochemical context. Here we map the chemistry of an embedded organic template structure within a carbonate skeleton of the foraminifera Orbulina universa using both atom probe tomography (APT), a 3D chemical imaging technique with Ångström-level spatial resolution, and time-of-flight secondary ionization mass spectrometry (ToF-SIMS), a 2D chemical imaging technique with submicron resolution. We quantitatively link these observations, revealing that the organic template in O. universa is uniquely enriched in both Na and Mg, and contributes to intraskeletal chemical heterogeneity. Our APT analyses reveal the cation composition of the organic surface, offering evidence to suggest that cations other than Ca, previously considered passive spectator ions in biomineral templating, may be important in defining the energetics of carbonate nucleation on organic templates.

摘要

浮游生物、珊瑚和其他生物会产生碳酸钙骨骼,这些骨骼对它们的生存至关重要,是全球碳循环的关键组成部分,并在其地球化学中记录了过去海洋学状况的档案。这些生物矿物形成的一个关键方面是有机模板结构与矿物沉淀过程之间的相互作用。基于实验室的研究表明,这些原子尺度的过程会深刻影响矿物的结构和组成,但它们在钙化生物中的重要性却鲜为人知,因为很难在与空间相关的尺度上测量体内生物矿物界面的化学性质。了解模板在生物矿物成核中的作用及其在骨骼地球化学中的重要性需要一种综合的多尺度方法,这种方法可以将有机-矿物界面的原子尺度观测置于更广泛的结构和地球化学背景中。在这里,我们使用原子探针断层扫描(APT,一种具有埃级空间分辨率的三维化学成像技术)和飞行时间二次离子质谱(ToF-SIMS,一种具有亚微米分辨率的二维化学成像技术)来绘制有孔虫环球圆筛藻碳酸盐骨骼内嵌入的有机模板结构的化学图谱。我们定量地关联了这些观测结果,揭示出环球圆筛藻中的有机模板在钠和镁中都有独特的富集,并导致骨骼内的化学异质性。我们的APT分析揭示了有机表面的阳离子组成,提供了证据表明,除了钙之外的阳离子,以前被认为是生物矿物模板中的被动旁观离子,可能在定义有机模板上碳酸盐成核的能量学方面很重要。

相似文献

1
Nanometer-Scale Chemistry of a Calcite Biomineralization Template: Implications for Skeletal Composition and Nucleation.
Proc Natl Acad Sci U S A. 2016 Nov 15;113(46):12934-12939. doi: 10.1073/pnas.1522864113. Epub 2016 Oct 28.
2
Planktic foraminifera form their shells via metastable carbonate phases.
Nat Commun. 2017 Nov 2;8(1):1265. doi: 10.1038/s41467-017-00955-0.
3
Foraminifera promote calcification by elevating their intracellular pH.
Proc Natl Acad Sci U S A. 2009 Sep 8;106(36):15374-8. doi: 10.1073/pnas.0904306106. Epub 2009 Aug 25.
4
A modern scleractinian coral with a two-component calcite-aragonite skeleton.
Proc Natl Acad Sci U S A. 2021 Jan 19;118(3). doi: 10.1073/pnas.2013316117. Epub 2020 Dec 15.
5
Control of aragonite deposition in colonial corals by intra-skeletal macromolecules.
J Struct Biol. 2013 Aug;183(2):226-38. doi: 10.1016/j.jsb.2013.05.001. Epub 2013 May 10.
6
Mg isotope fractionation in biogenic carbonates of deep-sea coral, benthic foraminifera, and hermatypic coral.
Anal Bioanal Chem. 2011 Nov;401(9):2755-69. doi: 10.1007/s00216-011-5264-0. Epub 2011 Jul 30.
8
Biocalcification in porcelaneous foraminifera.
Elife. 2024 Aug 16;13:RP91568. doi: 10.7554/eLife.91568.
9
Calcite crystal orientation patterns in the bilayers of laminated shells of benthic rotaliid foraminifera.
J Struct Biol. 2021 Jun;213(2):107707. doi: 10.1016/j.jsb.2021.107707. Epub 2021 Feb 11.
10
Biogenic calcite granules--are brachiopods different?
Micron. 2013 Jan;44:395-403. doi: 10.1016/j.micron.2012.09.005. Epub 2012 Sep 16.

引用本文的文献

1
Atom probe tomography.
Nat Rev Methods Primers. 2021;1(51). doi: 10.1038/s43586-021-00047-w.
2
Growth dynamics and amorphous-to-crystalline phase transformation in natural nacre.
Nat Commun. 2023 Apr 20;14(1):2254. doi: 10.1038/s41467-023-37814-0.
3
Greater functional diversity and redundancy of coral endolithic microbiomes align with lower coral bleaching susceptibility.
ISME J. 2022 Oct;16(10):2406-2420. doi: 10.1038/s41396-022-01283-y. Epub 2022 Jul 15.
4
Biomineralization: Integrating mechanism and evolutionary history.
Sci Adv. 2022 Mar 11;8(10):eabl9653. doi: 10.1126/sciadv.abl9653. Epub 2022 Mar 9.
5
Fast and pervasive diagenetic isotope exchange in foraminifera tests is species-dependent.
Nat Commun. 2022 Jan 10;13(1):113. doi: 10.1038/s41467-021-27782-8.
7
Compositional variability of Mg/Ca, Sr/Ca, and Na/Ca in the deep-sea bivalve Acesta excavata (Fabricius, 1779).
PLoS One. 2021 Apr 30;16(4):e0245605. doi: 10.1371/journal.pone.0245605. eCollection 2021.
8
New frontiers in atom probe tomography: a review of research enabled by cryo and/or vacuum transfer systems.
Mater Today Adv. 2020 Sep;7. doi: 10.1016/j.mtadv.2020.100090. Epub 2020 Jul 10.
9
Novel Secondary Ion Mass Spectrometry Methods for the Examination of Metabolic Effects at the Cellular and Subcellular Levels.
Front Behav Neurosci. 2020 Jul 20;14:124. doi: 10.3389/fnbeh.2020.00124. eCollection 2020.

本文引用的文献

2
Atom probe tomography (APT) of carbonate minerals.
Micron. 2016 Jan;80:83-9. doi: 10.1016/j.micron.2015.10.001. Epub 2015 Oct 9.
5
Polysaccharide chemistry regulates kinetics of calcite nucleation through competition of interfacial energies.
Proc Natl Acad Sci U S A. 2013 Jun 4;110(23):9261-6. doi: 10.1073/pnas.1222162110. Epub 2013 May 20.
6
Proteomic analysis of skeletal organic matrix from the stony coral Stylophora pistillata.
Proc Natl Acad Sci U S A. 2013 Mar 5;110(10):3788-93. doi: 10.1073/pnas.1301419110. Epub 2013 Feb 19.
7
Hofmeister phenomena: an update on ion specificity in biology.
Chem Rev. 2012 Apr 11;112(4):2286-322. doi: 10.1021/cr200271j. Epub 2012 Jan 17.
8
Nanoscale chemical tomography of buried organic-inorganic interfaces in the chiton tooth.
Nature. 2011 Jan 13;469(7329):194-7. doi: 10.1038/nature09686.
9
Design of a laser-assisted tomographic atom probe at Münster University.
Rev Sci Instrum. 2010 Apr;81(4):043703. doi: 10.1063/1.3378674.
10
Carboxylated molecules regulate magnesium content of amorphous calcium carbonates during calcification.
Proc Natl Acad Sci U S A. 2009 Dec 22;106(51):21511-6. doi: 10.1073/pnas.0906741106. Epub 2009 Dec 2.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验