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蛋白质多聚化中的诱导契合:以嗜热栖热菌铁蛋白结合蛋白(HFBI)为例

Induced Fit in Protein Multimerization: The HFBI Case.

作者信息

Riccardi Laura, Mereghetti Paolo

机构信息

Laboratory of Molecular Modeling and Drug Discovery, Istituto Italiano di Tecnologia, Genoa, Italy.

Center for Nanotechnology Innovation @NEST, Istituto Italiano di Tecnologia, Pisa, Italy.

出版信息

PLoS Comput Biol. 2016 Nov 10;12(11):e1005202. doi: 10.1371/journal.pcbi.1005202. eCollection 2016 Nov.

Abstract

Hydrophobins, produced by filamentous fungi, are small amphipathic proteins whose biological functions rely on their unique surface-activity properties. Understanding the mechanistic details of the multimerization process is of primary importance to clarify the interfacial activity of hydrophobins. We used free energy calculations to study the role of a flexible β-hairpin in the multimerization process in hydrophobin II from Trichoderma reesei (HFBI). We characterized how the displacement of this β-hairpin controls the stability of the monomers/dimers/tetramers in solution. The regulation of the oligomerization equilibrium of HFBI will necessarily affect its interfacial properties, fundamental for its biological function and for technological applications. Moreover, we propose possible routes for the multimerization process of HFBI in solution. This is the first case where a mechanism by which a flexible loop flanking a rigid patch controls the protein-protein binding equilibrium, already known for proteins with charged binding hot-spots, is described within a hydrophobic patch.

摘要

丝状真菌产生的疏水蛋白是一类小的两亲性蛋白质,其生物学功能依赖于其独特的表面活性特性。了解多聚化过程的机制细节对于阐明疏水蛋白的界面活性至关重要。我们利用自由能计算来研究柔性β-发夹在里氏木霉疏水蛋白II(HFBI)多聚化过程中的作用。我们表征了该β-发夹的位移如何控制溶液中单体/二聚体/四聚体的稳定性。HFBI寡聚化平衡的调节必然会影响其界面性质,这对其生物学功能和技术应用至关重要。此外,我们提出了HFBI在溶液中多聚化过程的可能途径。这是首次在疏水区域内描述一种机制,即刚性区域侧翼的柔性环控制蛋白质-蛋白质结合平衡,这种机制在具有带电结合热点的蛋白质中已为人所知。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/48b0/5104427/124d8e8305ee/pcbi.1005202.g001.jpg

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