从亚马逊淡水环境分离出的蓝藻铜绿微囊藻CACIAM 03的基因组序列草图
Draft Genome Sequence of Microcystis aeruginosa CACIAM 03, a Cyanobacterium Isolated from an Amazonian Freshwater Environment.
作者信息
Castro Wendel Oliveira, Lima Alex Ranieri Jerônimo, Moraes Pablo Henrique Gonçalves, Siqueira Andrei Santos, Aguiar Délia Cristina Figueira, Baraúna Anna Rafaella Ferreira, Martins Luisa Carício, Fuzii Hellen Thais, de Lima Clayton Pereira Silva, Vianez-Júnior João Lídio Silva Gonçalves, Nunes Márcio Roberto Teixeira, Dall'Agnol Leonardo Teixeira, Gonçalves Evonnildo Costa
机构信息
Laboratório de Tecnologia Biomolecular, Instituto de Ciências Biológicas (ICB), Universidade Federal do Pará (UFPA), Belém, Pará, Brazil.
Laboratório de Patologia Clínica e Doenças Tropicais, Núcleo de Medicina Tropical, Universidade Federal do Pará, Belém, Pará, Brazil.
出版信息
Genome Announc. 2016 Nov 17;4(6):e01299-16. doi: 10.1128/genomeA.01299-16.
Abstract
Given its toxigenic potential, Microcystis aeruginosa is an important bloom-forming cyanobacterium. Here, we present a draft genome and annotation of the strain CACIAM 03, which was isolated from an Amazonian freshwater environment.
摘要
鉴于其产毒潜力，铜绿微囊藻是一种重要的形成水华的蓝藻。在此，我们展示了从亚马逊淡水环境中分离出的CACIAM 03菌株的基因组草图和注释。
相似文献
1
Draft Genome Sequence of Microcystis aeruginosa CACIAM 03, a Cyanobacterium Isolated from an Amazonian Freshwater Environment.从亚马逊淡水环境分离出的蓝藻铜绿微囊藻CACIAM 03的基因组序列草图
Genome Announc. 2016 Nov 17;4(6):e01299-16. doi: 10.1128/genomeA.01299-16.
2
Complete Genome Sequence of sp. Strain CACIAM 03H1, a Proteobacterium Obtained from a Nonaxenic Culture of .从.的非无菌培养物中获得的变形菌门菌株CACIAM 03H1的全基因组序列 。 （你提供的原文中“sp.”和“.”部分内容缺失，翻译可能不太完整准确，建议补充完整信息以便更精准翻译。）
Genome Announc. 2017 Oct 12;5(41):e01069-17. doi: 10.1128/genomeA.01069-17.
3
Draft Genome Sequence of sp. Strain CACIAM 70d, a Cyanobacterium Isolated from an Amazonian Freshwater Environment.从亚马逊淡水环境分离出的蓝藻菌株CACIAM 70d的基因组序列草图
Genome Announc. 2017 Jul 13;5(28):e00635-17. doi: 10.1128/genomeA.00635-17.
4
Draft Genome Sequence of Microcystis aeruginosa NIES-87, a Bloom-Forming Cyanobacterium from Lake Kasumigaura, Japan.来自日本霞浦湖的形成水华的蓝藻铜绿微囊藻NIES-87的基因组序列草图
Genome Announc. 2018 Feb 22;6(8):e01596-17. doi: 10.1128/genomeA.01596-17.
5
Complete Genome Sequence of Microcystis aeruginosa NIES-2549, a Bloom-Forming Cyanobacterium from Lake Kasumigaura, Japan.来自日本霞浦湖的形成水华的蓝藻——铜绿微囊藻NIES-2549的全基因组序列
Genome Announc. 2015 May 28;3(3):e00551-15. doi: 10.1128/genomeA.00551-15.
6
Draft Genome Sequence of the Brazilian Toxic Bloom-Forming Cyanobacterium Microcystis aeruginosa Strain SPC777.巴西产有毒水华形成蓝藻铜绿微囊藻菌株SPC777的基因组序列草图
Genome Announc. 2013 Aug 1;1(4):e00547-13. doi: 10.1128/genomeA.00547-13.
7
Draft genome database construction from four strains (NIES-298, FCY- 26, -27, and -28) of the cyanobacterium Microcystis aeruginosa.Draft 基因组数据库构建自 4 株铜绿微囊藻（NIES-298、FCY-26、-27 和 -28）。
J Microbiol Biotechnol. 2012 Sep;22(9):1208-13. doi: 10.4014/jmb.1112.12034.
8
Improved Draft Genome Sequence of NIES-298, a Microcystin-Producing Cyanobacterium from Lake Kasumigaura, Japan.日本霞浦湖产微囊藻毒素蓝藻NIES-298的改进基因组序列草图
Genome Announc. 2018 Feb 1;6(5):e01551-17. doi: 10.1128/genomeA.01551-17.
9
Draft Genome Sequences of Four Microcystis aeruginosa Strains (NIES-3787, NIES-3804, NIES-3806, and NIES-3807) Isolated from Lake Kasumigaura, Japan.从日本霞浦湖分离出的四株铜绿微囊藻（NIES-3787、NIES-3804、NIES-3806和NIES-3807）的基因组序列草图
Microbiol Resour Announc. 2020 Apr 2;9(14):e00052-20. doi: 10.1128/MRA.00052-20.
10
Draft Genome Sequence of Microcystis aeruginosa NIES-98, a Non-Microcystin-Producing Cyanobacterium from Lake Kasumigaura, Japan.日本霞浦湖非产微囊藻毒素蓝藻——铜绿微囊藻NIES-98的基因组序列草图
Genome Announc. 2016 Nov 10;4(6):e01187-16. doi: 10.1128/genomeA.01187-16.
引用本文的文献
1
In Silico Analysis of a GH3 β-Glucosidase from CACIAM 03.来自CACIAM 03的一种GH3 β-葡萄糖苷酶的计算机模拟分析
Microorganisms. 2023 Apr 11;11(4):998. doi: 10.3390/microorganisms11040998.
2
Insights Into sp. Metabolism Based on Comparative Genomics.基于比较基因组学对[物种名称]代谢的见解。 （原文中“sp.”指代不明，推测是某个物种的缩写，这里统一用[物种名称]表示）
Front Microbiol. 2018 Nov 20;9:2811. doi: 10.3389/fmicb.2018.02811. eCollection 2018.
3
Genomic screening of new putative antiviral lectins from Amazonian cyanobacteria based on a bioinformatics approach.基于生物信息学方法对来自亚马逊蓝藻的新型抗病毒凝集素进行基因组筛选。
Proteins. 2018 Oct;86(10):1047-1054. doi: 10.1002/prot.25577. Epub 2018 Sep 25.
本文引用的文献
1
MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets.MaxBin 2.0：一种从多个宏基因组数据集中恢复基因组的自动分箱算法。
Bioinformatics. 2016 Feb 15;32(4):605-7. doi: 10.1093/bioinformatics/btv638. Epub 2015 Oct 29.
2
antiSMASH 3.0-a comprehensive resource for the genome mining of biosynthetic gene clusters.antiSMASH 3.0——用于生物合成基因簇基因组挖掘的综合资源。
Nucleic Acids Res. 2015 Jul 1;43(W1):W237-43. doi: 10.1093/nar/gkv437. Epub 2015 May 6.
3
Update on RefSeq microbial genomes resources.RefSeq微生物基因组资源更新
Nucleic Acids Res. 2015 Jan;43(Database issue):D599-605. doi: 10.1093/nar/gku1062. Epub 2014 Dec 15.
4
Impact of environmental factors on the regulation of cyanotoxin production.环境因素对蓝藻毒素产生调控的影响。
Toxins (Basel). 2014 Jun 25;6(7):1951-78. doi: 10.3390/toxins6071951.
5
CISA: contig integrator for sequence assembly of bacterial genomes.CISA：用于细菌基因组序列组装的 contig 整合器。
PLoS One. 2013;8(3):e60843. doi: 10.1371/journal.pone.0060843. Epub 2013 Mar 28.
6
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes：一种新的基因组组装算法及其在单细胞测序中的应用
J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.
7
A day in the life of microcystis aeruginosa strain PCC 7806 as revealed by a transcriptomic analysis.微囊藻 PCC 7806 菌株的转录组分析揭示了其生活的一天。
PLoS One. 2011 Jan 19;6(1):e16208. doi: 10.1371/journal.pone.0016208.
8
MEGAN analysis of metagenomic data.宏基因组数据的MEGAN分析
Genome Res. 2007 Mar;17(3):377-86. doi: 10.1101/gr.5969107. Epub 2007 Jan 25.
Zotero 插件