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卵形拟杆菌多糖利用位点赋予的半乳甘露聚糖分解代谢:一种β-甘露聚糖酶的酶协同作用和晶体结构

Galactomannan Catabolism Conferred by a Polysaccharide Utilization Locus of Bacteroides ovatus: ENZYME SYNERGY AND CRYSTAL STRUCTURE OF A β-MANNANASE.

作者信息

Bågenholm Viktoria, Reddy Sumitha K, Bouraoui Hanene, Morrill Johan, Kulcinskaja Evelina, Bahr Constance M, Aurelius Oskar, Rogers Theresa, Xiao Yao, Logan Derek T, Martens Eric C, Koropatkin Nicole M, Stålbrand Henrik

机构信息

From the Department of Biochemistry and Structural Biology, Lund University P. O. Box 124, S-221 00 Lund, Sweden and.

the Department of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, Michigan 48109.

出版信息

J Biol Chem. 2017 Jan 6;292(1):229-243. doi: 10.1074/jbc.M116.746438. Epub 2016 Nov 21.

Abstract

A recently identified polysaccharide utilization locus (PUL) from Bacteroides ovatus ATCC 8483 is transcriptionally up-regulated during growth on galacto- and glucomannans. It encodes two glycoside hydrolase family 26 (GH26) β-mannanases, BoMan26A and BoMan26B, and a GH36 α-galactosidase, BoGal36A. The PUL also includes two glycan-binding proteins, confirmed by β-mannan affinity electrophoresis. When this PUL was deleted, B. ovatus was no longer able to grow on locust bean galactomannan. BoMan26A primarily formed mannobiose from mannan polysaccharides. BoMan26B had higher activity on galactomannan with a high degree of galactosyl substitution and was shown to be endo-acting generating a more diverse mixture of oligosaccharides, including mannobiose. Of the two β-mannanases, only BoMan26B hydrolyzed galactoglucomannan. A crystal structure of BoMan26A revealed a similar structure to the exo-mannobiohydrolase CjMan26C from Cellvibrio japonicus, with a conserved glycone region (-1 and -2 subsites), including a conserved loop closing the active site beyond subsite -2. Analysis of cellular location by immunolabeling and fluorescence microscopy suggests that BoMan26B is surface-exposed and associated with the outer membrane, although BoMan26A and BoGal36A are likely periplasmic. In light of the cellular location and the biochemical properties of the two characterized β-mannanases, we propose a scheme of sequential action by the glycoside hydrolases encoded by the β-mannan PUL and involved in the β-mannan utilization pathway in B. ovatus. The outer membrane-associated BoMan26B initially acts on the polysaccharide galactomannan, producing comparably large oligosaccharide fragments. Galactomanno-oligosaccharides are further processed in the periplasm, degalactosylated by BoGal36A, and subsequently hydrolyzed into mainly mannobiose by the β-mannanase BoMan26A.

摘要

最近在卵形拟杆菌ATCC 8483中鉴定出的一个多糖利用位点(PUL),在以半乳甘露聚糖和葡甘露聚糖为碳源生长期间转录上调。它编码两个糖苷水解酶家族26(GH26)的β-甘露聚糖酶,即BoMan26A和BoMan26B,以及一个GH36 α-半乳糖苷酶,BoGal36A。该PUL还包括两个聚糖结合蛋白,这已通过β-甘露聚糖亲和电泳得到证实。当删除这个PUL时,卵形拟杆菌就不再能够在刺槐豆半乳甘露聚糖上生长。BoMan26A主要从甘露聚糖多糖生成甘露二糖。BoMan26B对半乳糖基取代程度高的半乳甘露聚糖具有更高的活性,并且显示为内切作用,可产生更多样化的寡糖混合物,包括甘露二糖。在这两种β-甘露聚糖酶中,只有BoMan26B能水解半乳葡甘露聚糖。BoMan26A的晶体结构显示出与来自日本纤维弧菌的外切甘露二糖水解酶CjMan26C相似的结构,具有一个保守的糖基区域(-1和-2亚位点),包括一个保守的环,该环封闭了亚位点-2以外的活性位点。通过免疫标记和荧光显微镜对细胞定位进行分析表明,BoMan26B位于细胞表面并与外膜相关,尽管BoMan26A和BoGal36A可能位于周质中。鉴于这两种已鉴定的β-甘露聚糖酶的细胞定位和生化特性,我们提出了一个由β-甘露聚糖PUL编码并参与卵形拟杆菌β-甘露聚糖利用途径的糖苷水解酶的顺序作用方案。与外膜相关的BoMan26B首先作用于多糖半乳甘露聚糖,产生相对较大的寡糖片段。半乳甘露寡糖在周质中进一步加工,由BoGal36A进行去半乳糖基化,随后由β-甘露聚糖酶BoMan26A水解成主要为甘露二糖。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cf30/5217682/2401af2e8340/zbc0041759200001.jpg

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