Wernersson Sven, Bågenholm Viktoria, Persson Cecilia, Upadhyay Santosh Kumar, Stålbrand Henrik, Akke Mikael
Department of Chemistry, Biophysical Chemistry, Center for Molecular Protein Science, Lund University, Lund, Sweden.
Department of Chemistry, Biochemistry and Structural Biology, Center for Molecular Protein Science, Lund University, Lund, Sweden.
Biomol NMR Assign. 2019 Apr;13(1):213-218. doi: 10.1007/s12104-019-09879-w. Epub 2019 Feb 7.
Bacteroides ovatus is a member of the human gut microbiota. The importance of this microbial consortium involves the degradation of complex dietary glycans mainly conferred by glycoside hydrolases. In this study we focus on one such catabolic glycoside hydrolase from B. ovatus. The enzyme, termed BoMan26A, is a β-mannanase that takes part in the hydrolytic degradation of galactomannans. The crystal structure of BoMan26A has previously been determined to reveal a TIM-barrel like fold, but the relation between the protein structure and the mode of substrate processing has not yet been studied. Here we report residue-specific assignments for 95% of the 344 backbone amides of BoMan26A. The assignments form the basis for future studies of the relationship between substrate interactions and protein dynamics. In particular, the potential role of loops adjacent to glycan binding sites is of interest for such studies.
卵形拟杆菌是人类肠道微生物群的一员。这个微生物群落的重要性在于主要由糖苷水解酶介导的复杂膳食聚糖的降解。在本研究中,我们聚焦于卵形拟杆菌中的一种此类分解代谢糖苷水解酶。该酶名为BoMan26A,是一种参与半乳甘露聚糖水解降解的β-甘露聚糖酶。BoMan26A的晶体结构此前已被测定,显示出类似TIM桶的折叠,但蛋白质结构与底物加工模式之间的关系尚未得到研究。在此,我们报告了BoMan26A的344个主链酰胺中95%的残基特异性归属。这些归属为未来研究底物相互作用与蛋白质动力学之间的关系奠定了基础。特别是,聚糖结合位点附近环的潜在作用对于此类研究很有意义。