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海洋趋磁球状-卵形细菌基因组的嵌合性质定义了变形菌门中的一个新类群。

The chimeric nature of the genomes of marine magnetotactic coccoid-ovoid bacteria defines a novel group of Proteobacteria.

作者信息

Ji Boyang, Zhang Sheng-Da, Zhang Wei-Jia, Rouy Zoe, Alberto François, Santini Claire-Lise, Mangenot Sophie, Gagnot Séverine, Philippe Nadège, Pradel Nathalie, Zhang Lichen, Tempel Sébastien, Li Ying, Médigue Claudine, Henrissat Bernard, Coutinho Pedro M, Barbe Valérie, Talla Emmanuel, Wu Long-Fei

机构信息

Aix Marseille Univ, CNRS, LCB, Marseille, France.

Centre National de la Recherche Scientifique, Laboratoire International Associé de la Bio-Minéralisation et Nano-Structures (LIA-BioMNSL), Marseille cedex 20, F-13402, France.

出版信息

Environ Microbiol. 2017 Mar;19(3):1103-1119. doi: 10.1111/1462-2920.13637. Epub 2017 Feb 1.

Abstract

Magnetotactic bacteria (MTB) are a group of phylogenetically and physiologically diverse Gram-negative bacteria that synthesize intracellular magnetic crystals named magnetosomes. MTB are affiliated with three classes of Proteobacteria phylum, Nitrospirae phylum, Omnitrophica phylum and probably with the candidate phylum Latescibacteria. The evolutionary origin and physiological diversity of MTB compared with other bacterial taxonomic groups remain to be illustrated. Here, we analysed the genome of the marine magneto-ovoid strain MO-1 and found that it is closely related to Magnetococcus marinus MC-1. Detailed analyses of the ribosomal proteins and whole proteomes of 390 genomes reveal that, among the Proteobacteria analysed, only MO-1 and MC-1 have coding sequences (CDSs) with a similarly high proportion of origins from Alphaproteobacteria, Betaproteobacteria, Deltaproteobacteria and Gammaproteobacteria. Interestingly, a comparative metabolic network analysis with anoxic network enzymes from sequenced MTB and non-MTB successfully allows the eventual prediction of an organism with a metabolic profile compatible for magnetosome production. Altogether, our genomic analysis reveals multiple origins of MO-1 and M. marinus MC-1 genomes and suggests a metabolism-restriction model for explaining whether a bacterium could become an MTB upon acquisition of magnetosome encoding genes.

摘要

趋磁细菌(MTB)是一类在系统发育和生理上具有多样性的革兰氏阴性细菌,它们能合成细胞内磁性晶体,即磁小体。MTB隶属于变形菌门的三个纲、硝化螺旋菌门、全营养菌门,可能还隶属于候选菌门类光杆菌门。与其他细菌分类群相比,MTB的进化起源和生理多样性仍有待阐明。在此,我们分析了海洋磁卵形菌株MO-1的基因组,发现它与海磁球菌MC-1密切相关。对390个基因组的核糖体蛋白和全蛋白质组的详细分析表明,在所分析的变形菌中,只有MO-1和MC-1具有编码序列(CDS),其来自α-变形菌、β-变形菌、δ-变形菌和γ-变形菌的起源比例相似。有趣的是,对已测序的MTB和非MTB的缺氧网络酶进行比较代谢网络分析,最终成功预测出一种具有与磁小体产生相适应的代谢谱的生物体。总之,我们的基因组分析揭示了MO-1和海磁球菌MC-1基因组的多个起源,并提出了一种代谢限制模型,用于解释细菌在获得磁小体编码基因后是否会成为MTB。

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