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通过分析开放基因组数据库揭示趋磁细菌的多样性。

Unravelling the diversity of magnetotactic bacteria through analysis of open genomic databases.

机构信息

Research Center of Biotechnology of the Russian Academy of Sciences, Institute of Bioengineering, Moscow, Russia.

Lomonosov Moscow State University, Moscow, Russia.

出版信息

Sci Data. 2020 Jul 31;7(1):252. doi: 10.1038/s41597-020-00593-0.

Abstract

Magnetotactic bacteria (MTB) are prokaryotes that possess genes for the synthesis of membrane-bounded crystals of magnetite or greigite, called magnetosomes. Despite over half a century of studying MTB, only about 60 genomes have been sequenced. Most belong to Proteobacteria, with a minority affiliated with the Nitrospirae, Omnitrophica, Planctomycetes, and Latescibacteria. Due to the scanty information available regarding MTB phylogenetic diversity, little is known about their ecology, evolution and about the magnetosome biomineralization process. This study presents a large-scale search of magnetosome biomineralization genes and reveals 38 new MTB genomes. Several of these genomes were detected in the phyla Elusimicrobia, Candidatus Hydrogenedentes, and Nitrospinae, where magnetotactic representatives have not previously been reported. Analysis of the obtained putative magnetosome biomineralization genes revealed a monophyletic origin capable of putative greigite magnetosome synthesis. The ecological distributions of the reconstructed MTB genomes were also analyzed and several patterns were identified. These data suggest that open databases are an excellent source for obtaining new information of interest.

摘要

趋磁细菌(MTB)是具有合成膜结合磁铁矿或 greigite 晶体(称为磁小体)基因的原核生物。尽管对 MTB 的研究已经超过半个世纪,但只有大约 60 个基因组被测序。大多数属于变形菌门,少数属于硝化螺旋菌门、Omnitrophica、浮霉菌门和 Latescibacteria。由于有关 MTB 系统发育多样性的信息很少,因此对其生态学、进化以及磁小体生物矿化过程知之甚少。本研究进行了大规模的磁小体生物矿化基因搜索,并揭示了 38 个新的 MTB 基因组。其中一些基因组在 Elusimicrobia、Candidatus Hydrogenedentes 和 Nitrospinae 门中被检测到,这些门以前没有报道过趋磁代表。对获得的假定磁小体生物矿化基因的分析表明,它们具有单系起源,能够进行 greigite 磁小体的合成。还对重建的 MTB 基因组的生态分布进行了分析,并确定了几种模式。这些数据表明,开放数据库是获取新的有趣信息的绝佳来源。

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