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利用生物信息学方法鉴定富血小板血浆诱导人毛乳头细胞中的关键基因。

Identification of key genes induced by platelet-rich plasma in human dermal papilla cells using bioinformatics methods.

作者信息

Shen Haiyan, Cheng Hanxiao, Chen Haihua, Zhang Jufang

机构信息

Department of Plastic Surgery, Hangzhou First People's Hospital, Nanjing Medical University, Hangzhou, Zhejiang 310006, P.R. China.

出版信息

Mol Med Rep. 2017 Jan;15(1):81-88. doi: 10.3892/mmr.2016.5988. Epub 2016 Dec 6.

Abstract

Dermal papilla cells (DPCs) are located at the base of hair follicles, and are known to induce hair follicle regeneration. Platelet-rich plasma (PRP) functions in hair follicle regeneration. To investigate the influence of PRP on DPCs, the present study analyzed RNA‑seq data of human hair dermal papilla cells (HHDPCs) that were treated or untreated by PRP. The data included in the RNA‑seq were from two normal and two treated HHDPC samples. Following identification by Cuffdiff software, differentially expressed genes (DEGs) underwent enrichment analyses, and protein-protein interaction networks were constructed using Cytoscape software. Additionally, transcription factor (TF)‑DEG and TF-long non‑coding RNA (lncRNA) regulatory networks were constructed. A total of 178 differentially expressed lncRNA were screened, 365 were upregulated and 142 were downregulated. Notably, upregulated cyclin dependent kinase 1 (CDK1) (degree=76), polo‑like kinase 1 (PLK1) (degree=65), cell division cycle 20 (degree=50), cyclin B1 (degree=49), aurora kinase B (degree=47), cyclin dependent kinase 2 (degree=46) and downregulated v‑myc avian myelocytomatosis viral oncogene homolog (MYC) (degree=12) had higher degrees in networks. In addition, CCAAT/enhancer binding protein β, E2F transcription factor 1 (E2F1), early growth response 1 and MYC may be key TFs for their target genes, and were enriched in pathways associated with the cell cycle. They may also be involved in cell proliferation via various interactions with other genes, for example CDK1‑PLK1 and E2F1→CDK1. These dysregulated genes induced by PRP may affect proliferation of HHDPCs.

摘要

真皮乳头细胞(DPCs)位于毛囊底部,已知其可诱导毛囊再生。富血小板血浆(PRP)在毛囊再生中发挥作用。为了研究PRP对DPCs的影响,本研究分析了经PRP处理或未处理的人毛发真皮乳头细胞(HHDPCs)的RNA测序数据。RNA测序中包含的数据来自两个正常和两个经处理的HHDPC样本。经Cuffdiff软件鉴定后,对差异表达基因(DEGs)进行了富集分析,并使用Cytoscape软件构建了蛋白质-蛋白质相互作用网络。此外,还构建了转录因子(TF)-DEG和TF-长链非编码RNA(lncRNA)调控网络。共筛选出178个差异表达的lncRNA,其中365个上调,142个下调。值得注意的是,上调的细胞周期蛋白依赖性激酶1(CDK1)(度=76)、polo样激酶1(PLK1)(度=65)、细胞分裂周期20(度=50)、细胞周期蛋白B1(度=49)、极光激酶B(度=47)、细胞周期蛋白依赖性激酶2(度=46)以及下调的v-myc禽骨髓细胞瘤病毒癌基因同源物(MYC)(度=12)在网络中具有较高的度。此外,CCAAT/增强子结合蛋白β、E2F转录因子1(E2F1)、早期生长反应1和MYC可能是其靶基因的关键转录因子,并在与细胞周期相关的通路中富集。它们还可能通过与其他基因的各种相互作用参与细胞增殖,例如CDK1-PLK1和E2F1→CDK1。这些由PRP诱导的失调基因可能会影响HHDPCs的增殖。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6b73/5355651/37fe29fef93d/MMR-15-01-0081-g00.jpg

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