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土壤DNA宏条形码分析与高通量测序作为一种法医工具:考量因素、潜在局限与建议

Soil DNA metabarcoding and high-throughput sequencing as a forensic tool: considerations, potential limitations and recommendations.

作者信息

Young J M, Austin J J, Weyrich L S

机构信息

Australian Centre for Ancient DNA, University of Adelaide, Adelaide, South Australia, 5005, Australia

Australian Centre for Ancient DNA, University of Adelaide, Adelaide, South Australia, 5005, Australia.

出版信息

FEMS Microbiol Ecol. 2017 Feb;93(2). doi: 10.1093/femsec/fiw207. Epub 2016 Oct 8.

Abstract

Analysis of physical evidence is typically a deciding factor in forensic casework by establishing what transpired at a scene or who was involved. Forensic geoscience is an emerging multi-disciplinary science that can offer significant benefits to forensic investigations. Soil is a powerful, nearly 'ideal' contact trace evidence, as it is highly individualistic, easy to characterise, has a high transfer and retention probability, and is often overlooked in attempts to conceal evidence. However, many real-life cases encounter close proximity soil samples or soils with low inorganic content, which cannot be easily discriminated based on current physical and chemical analysis techniques. The capability to improve forensic soil discrimination, and identify key indicator taxa from soil using the organic fraction is currently lacking. The development of new DNA sequencing technologies offers the ability to generate detailed genetic profiles from soils and enhance current forensic soil analyses. Here, we discuss the use of DNA metabarcoding combined with high-throughput sequencing (HTS) technology to distinguish between soils from different locations in a forensic context. Specifically, we provide recommendations for best practice, outline the potential limitations encountered in a forensic context and describe the future directions required to integrate soil DNA analysis into casework.

摘要

物证分析通常是法医案件工作中的一个决定性因素,它能确定现场发生了什么或涉及哪些人。法医地球科学是一门新兴的多学科科学,可为法医调查带来显著益处。土壤是一种有力的、近乎“理想”的接触痕迹证据,因为它具有高度独特性、易于表征、转移和留存概率高,且在试图隐藏证据时常常被忽视。然而,许多实际案例中会遇到距离相近的土壤样本或无机成分含量低的土壤,基于当前的物理和化学分析技术难以轻易区分。目前缺乏提高法医土壤鉴别能力以及利用有机成分从土壤中识别关键指示类群的能力。新的DNA测序技术的发展提供了从土壤中生成详细遗传图谱并增强当前法医土壤分析的能力。在此,我们讨论在法医背景下使用DNA宏条形码结合高通量测序(HTS)技术来区分不同地点的土壤。具体而言,我们提供最佳实践建议概述法医背景下遇到的潜在限制,并描述将土壤DNA分析整合到案件工作中所需的未来方向。

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