卡利普索：一个用于挖掘和可视化微生物组与环境相互作用的用户友好型网络服务器。
Calypso: a user-friendly web-server for mining and visualizing microbiome-environment interactions.
作者信息
Zakrzewski Martha, Proietti Carla, Ellis Jonathan J, Hasan Shihab, Brion Marie-Jo, Berger Bernard, Krause Lutz
机构信息
QIMR Berghofer Medical Research Institute, Brisbane, QLD 4006, Australia.
The University of Queensland Diamantina Institute, Brisbane, QLD 4102, Australia.
出版信息
Bioinformatics. 2017 Mar 1;33(5):782-783. doi: 10.1093/bioinformatics/btw725.
UNLABELLED
Calypso is an easy-to-use online software suite that allows non-expert users to mine, interpret and compare taxonomic information from metagenomic or 16S rDNA datasets. Calypso has a focus on multivariate statistical approaches that can identify complex environment-microbiome associations. The software enables quantitative visualizations, statistical testing, multivariate analysis, supervised learning, factor analysis, multivariable regression, network analysis and diversity estimates. Comprehensive help pages, tutorials and videos are provided via a wiki page.
AVAILABILITY AND IMPLEMENTATION
The web-interface is accessible via http://cgenome.net/calypso/ . The software is programmed in Java, PERL and R and the source code is available from Zenodo ( https://zenodo.org/record/50931 ). The software is freely available for non-commercial users.
CONTACT
SUPPLEMENTARY INFORMATION
Supplementary data are available at Bioinformatics online.
未标注
Calypso是一款易于使用的在线软件套件，可让非专业用户挖掘、解释和比较来自宏基因组或16S rDNA数据集的分类信息。Calypso专注于多元统计方法，能够识别复杂的环境与微生物组之间的关联。该软件支持定量可视化、统计检验、多元分析、监督学习、因子分析、多变量回归、网络分析和多样性估计。通过维基页面提供了全面的帮助页面、教程和视频。
可用性与实现
联系方式
补充信息
补充数据可在《生物信息学》在线获取。
Zotero 插件