Argov Tal, Rabinovich Lev, Sigal Nadejda, Herskovits Anat A
Department of Molecular Microbiology and Biotechnology, George S. Wise Faculty of Life Sciences, Tel Aviv University, Ramat Aviv, Tel Aviv, Israel.
Department of Molecular Microbiology and Biotechnology, George S. Wise Faculty of Life Sciences, Tel Aviv University, Ramat Aviv, Tel Aviv, Israel
Appl Environ Microbiol. 2017 Mar 2;83(6). doi: 10.1128/AEM.02927-16. Print 2017 Mar 15.
Construction of mutants by allelic exchange has been laborious and time-consuming due to lack of proficient selection markers for the final recombination event, that is, a marker conveying substance sensitivity to the bacteria bearing it, enabling the exclusion of merodiploids and selection for plasmid loss. In order to address this issue, we engineered a counterselection marker based on a mutated phenylalanyl-tRNA synthetase gene (). This mutation renders the phenylalanine-binding site of the enzyme more promiscuous and allows the binding of the toxic -chloro-phenylalanine analog (-Cl-phe) as a substrate. When is introduced into and highly expressed under control of a constitutively active promoter, the bacteria become sensitive to -Cl-phe supplemented in the medium. This enabled us to utilize as a negative selection marker and generate a novel, efficient suicide vector for allelic exchange in We used this vector to investigate the monocin genomic region in strain 10403S by constructing deletion mutants of the region. We have found this region to be active and to cause bacterial lysis upon mitomycin C treatment. The future applications of such an effective counterselection system, which does not require any background genomic alterations, are vast, as it can be modularly used in various selection systems (e.g., genetic screens). We expect this counterselection marker to be a valuable genetic tool in research on is an opportunistic intracellular pathogen and a widely studied model organism. An efficient counterselection marker is a long-standing need in research for improving the ability to design and perform various genetic manipulations and screening systems for different purposes. We report the construction and utilization of an efficient suicide vector for allelic exchange which can be conjugated, leaves no marker in the bacterial chromosome, and does not require the use of sometimes leaky inducible promoters. This highly efficient genome editing tool for will allow for rapid sequential mutagenesis, introduction of point mutations, and design of screening systems. We anticipate that it will be extensively used by the research community and yield novel insights into the diverse fields studied using this model organism.
由于缺乏用于最终重组事件的有效选择标记,即一种能使携带它的细菌对某种物质敏感的标记,从而能够排除部分二倍体并选择质粒丢失情况,通过等位基因交换构建突变体一直既费力又耗时。为了解决这个问题,我们基于一个突变的苯丙氨酰 - tRNA合成酶基因()设计了一个反选择标记。这种突变使该酶的苯丙氨酸结合位点更加宽泛,允许有毒的 - 氯苯丙氨酸类似物(-Cl - phe)作为底物结合。当将其导入并在组成型活性启动子的控制下高表达时,细菌对培养基中添加的 -Cl - phe变得敏感。这使我们能够将用作负选择标记,并为在中进行等位基因交换生成一种新型高效的自杀载体。我们使用该载体通过构建该区域的缺失突变体来研究菌株10403S中的单霉素基因组区域。我们发现该区域具有活性,并且在丝裂霉素C处理后会导致细菌裂解。这种无需任何背景基因组改变的有效反选择系统的未来应用非常广泛,因为它可以模块化地用于各种选择系统(例如遗传筛选)。我们预期这个反选择标记将成为研究中的一种有价值的遗传工具,是一种机会性细胞内病原体,也是一个被广泛研究的模式生物。在研究中,长期以来一直需要一种有效的反选择标记来提高设计和执行各种针对不同目的的基因操作和筛选系统的能力。我们报告了一种用于等位基因交换的高效自杀载体的构建和应用,该载体可以进行接合转移,不会在细菌染色体中留下标记,并且不需要使用有时会渗漏的诱导型启动子。这种用于的高效基因组编辑工具将允许快速进行连续诱变、引入点突变以及设计筛选系统。我们预计它将被研究界广泛使用,并为使用这种模式生物研究的各个领域带来新的见解。