Bajrai Leena H, de Assis Felipe L, Azhar Esam I, Jardot Priscilla, Robert Catherine, Abrahão Jônatas, Raoult Didier, La Scola Bernard
Department of Biochemistry, Faculty of Science, King Abdulaziz UniversityJeddah, Saudi Arabia; Unité des Rickettsies, URMITE UMR CNRS 7278 IRD 198 INSERM U1095, Facultés de Médecine et de Pharmacie, IHU Méditerranée Infection, Aix-Marseille UniversitéMarseille, France.
Laboratório de Vírus, Belo Horizonte, Departamento de Microbiologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais Minas Gerais, Brazil.
Front Microbiol. 2016 Dec 20;7:2029. doi: 10.3389/fmicb.2016.02029. eCollection 2016.
The number of novel giant viruses identified and characterized from the recently proposed order has increased in recent years and new questions have been raised regarding viral diversity and evolution. Here, we describe the isolation and characterization of Saudi moumouvirus (SDMV), a new giant virus belonging to lineage B, isolated from a sewage sample taken from the King Abdulaziz University hospital in Jeddah, Saudi Arabia. SDMV presented 500 nm icosahedral particles with a 1,046,087 bp genome, which is larger than moumouvirus-like genomes which have been described in the past. The SDMV genome was predicted to encode 868 ORFs, ranging in size from 54 to 2,914 amino acids, with a mean size of 349 aa. Furthermore, this genome was predicted to encode 40 new genes (ORFans) without similarity with other sequences (ORFan L850 transcript was detected by qPCR in infected amoeba), in addition to 42 hypothetical proteins (pseudo-ORFs) with less than 100 aa, which matched other sequences in the NCBI nr database. Phylogenetic analysis showed that SDMV clustered together with mimiviruses from lineage B, including moumouvirus-like strains. It is, therefore, the third Mimivirus to be isolated in Asia and the first of group B.
近年来,从最近提议的目(分类阶元)中鉴定和表征的新型巨型病毒数量有所增加,并且关于病毒多样性和进化也提出了新问题。在此,我们描述了沙特穆穆病毒(SDMV)的分离和表征,这是一种属于B谱系的新型巨型病毒,从沙特阿拉伯吉达阿卜杜勒阿齐兹国王大学医院采集的污水样本中分离得到。SDMV呈现出500纳米的二十面体颗粒,基因组大小为1,046,087碱基对,比过去描述的类穆穆病毒基因组更大。SDMV基因组预计编码868个开放阅读框(ORF),大小从54到2,914个氨基酸不等,平均大小为349个氨基酸。此外,除了42个长度小于100个氨基酸的假定蛋白(假开放阅读框)外,该基因组预计还编码40个与其他序列无相似性的新基因(孤儿基因,通过qPCR在受感染的变形虫中检测到孤儿基因L850转录本),这些假定蛋白与NCBI nr数据库中的其他序列匹配。系统发育分析表明,SDMV与来自B谱系的拟菌病毒聚集在一起,包括类穆穆病毒菌株。因此,它是在亚洲分离出的第三种拟菌病毒,也是B组中的第一种。