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印度孟买污水中巨型病毒——孟买米米病毒的分离与全基因组测序

Isolation and complete genome sequencing of Mimivirus bombay, a Giant Virus in sewage of Mumbai, India.

作者信息

Chatterjee Anirvan, Ali Farhan, Bange Disha, Kondabagil Kiran

机构信息

Indian Institute of Technology Bombay, Powai, Mumbai, Maharashtra 400076, India.

出版信息

Genom Data. 2016 May 31;9:1-3. doi: 10.1016/j.gdata.2016.05.013. eCollection 2016 Sep.

Abstract

We report the isolation and complete genome sequencing of a new Mimiviridae family member, infecting Acanthamoeba castellanii, from sewage in Mumbai, India. The isolated virus has a particle size of about 435 nm and a 1,182,200-bp genome. A phylogeny based on the DNA polymerase sequence placed the isolate as a new member of the Mimiviridae family lineage A and was named as Mimivirus bombay. Extensive presence of Mimiviridae family members in different environmental niches, with remarkably similar genome size and genetic makeup, point towards an evolutionary advantage that needs to be further investigated. The complete genome sequence of Mimivirus bombay was deposited at GenBank/EMBL/DDBJ under the accession number KU761889.

摘要

我们报告了从印度孟买污水中分离出的一种感染卡氏棘阿米巴的新型拟菌病毒科家族成员,并完成了其全基因组测序。分离出的病毒颗粒大小约为435纳米,基因组为1,182,200碱基对。基于DNA聚合酶序列的系统发育分析将该分离株定位为拟菌病毒科家族谱系A的新成员,并将其命名为孟买米米病毒。拟菌病毒科家族成员在不同环境生态位中广泛存在,其基因组大小和基因组成非常相似,这表明存在一种有待进一步研究的进化优势。孟买米米病毒的全基因组序列已保存在GenBank/EMBL/DDBJ中,登录号为KU761889。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4897/4906119/a0d37516579c/gr1.jpg

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