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二型花柱植物花发育的测序与比较转录组学

Sequencing and Comparative Transcriptomics of Floral Development of the Distylous Species .

作者信息

Cohen James I

机构信息

Kettering University Flint, MI, USA.

出版信息

Front Plant Sci. 2016 Dec 23;7:1934. doi: 10.3389/fpls.2016.01934. eCollection 2016.

Abstract

Genes controlling the morphological, micromorphological, and physiological components of the breeding system distyly have been hypothesized, but many of the genes have not been investigated throughout development of the two floral morphs. To this end, the present study is an examination of comparative transcriptomes from three stages of development for the floral organs of the morphs of . Transcriptomes of flowers of the two morphs, from various stages of development, were sequenced using an Illumina HiSeq 2000. The floral transcriptome of was assembled, and differential gene expression (DE) was identified between morphs, throughout development. Additionally, Gene Ontology (GO) terms for DE genes were determined. Fewer genes were DE early in development compared to later in development, with more genes highly expressed in the gynoecium of the SS morph and the corolla and androecium of the LS morph. A reciprocal pattern was observed later in development, and many more genes were DE during this latter stage. During early development, DE genes appear to be involved in growth and floral development, and during later development, DE genes seem to affect physiological functions. Interestingly, many genes involved in response to stress were identified as DE between morphs.

摘要

已经有假说认为存在控制二型花柱繁育系统的形态、微观形态和生理成分的基因,但许多基因在两种花型的整个发育过程中都未得到研究。为此,本研究对两种花型花器官发育三个阶段的转录组进行了比较分析。使用Illumina HiSeq 2000对两种花型不同发育阶段的花朵转录组进行测序。组装了[物种名称]的花转录组,并确定了两种花型在整个发育过程中的差异基因表达(DE)。此外,还确定了差异表达基因的基因本体(GO)术语。与发育后期相比,发育早期差异表达的基因较少,更多基因在SS花型的雌蕊以及LS花型的花冠和雄蕊中高表达。在发育后期观察到相反的模式,在此后期阶段有更多基因差异表达。在发育早期,差异表达基因似乎参与生长和花发育,而在发育后期,差异表达基因似乎影响生理功能。有趣的是,许多参与应激反应的基因被确定为两种花型之间的差异表达基因。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d910/5179544/a00df61931c2/fpls-07-01934-g0001.jpg

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