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弗雷明汉心脏研究中心的心房颤动全基因组甲基化关联研究。

Methylome-wide Association Study of Atrial Fibrillation in Framingham Heart Study.

机构信息

National Heart Lung and Blood Institute's and Boston University's Framingham Heart Study, Framingham, MA, USA.

Section of Computational Biomedicine, Department of Medicine, Boston University School of Medicine, Boston, MA, USA.

出版信息

Sci Rep. 2017 Jan 9;7:40377. doi: 10.1038/srep40377.

DOI:10.1038/srep40377
PMID:28067321
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5220313/
Abstract

Atrial fibrillation (AF) is the most common cardiac arrhythmia, but little is known about the molecular mechanisms associated with AF arrhythmogenesis. DNA methylation is an important epigenetic mechanism that regulates gene expression and downstream biological processes. We hypothesize that DNA methylation might play an important role in the susceptibility to develop AF. A total of 2,639 participants from the Offspring Cohort of Framingham Heart Study were enrolled in the current study. These participants included 183 participants with prevalent AF and 220 with incident AF during up to 9 years follow up. Genome-wide methylation was profiled using the Illumina Infinium HumanMethylation450 BeadChip on blood-derived DNA collected during the eighth examination cycle (2005-2008). Two CpG sites were significantly associated with prevalent AF, and five CpGs were associated with incident AF after correction for multiple testing (FDR < 0.05). Fourteen previously reported genome-wide significant AF-related SNP were each associated with at least one CpG site; the most significant association was rs6490029 at the CUX2 locus and cg10833066 (P = 9.5 × 10). In summary, we performed genome-wide methylation profiling in a community-based cohort and identified seven methylation signatures associated with AF. Our study suggests that DNA methylation might play an important role in AF arrhythmogenesis.

摘要

心房颤动(AF)是最常见的心律失常,但与 AF 心律失常发生相关的分子机制知之甚少。DNA 甲基化是一种重要的表观遗传机制,可调节基因表达和下游生物过程。我们假设 DNA 甲基化可能在 AF 的易感性中发挥重要作用。共有 2639 名来自弗雷明汉心脏研究后代队列的参与者被纳入本研究。这些参与者包括 183 名有现患 AF 的参与者和 220 名在 9 年的随访期间发生 AF 的参与者。使用 Illumina Infinium HumanMethylation450 BeadChip 在第八次检查周期(2005-2008 年)期间收集的血液衍生 DNA 上进行全基因组甲基化分析。有两个 CpG 位点与现患 AF 显著相关,在进行多次测试校正后(FDR < 0.05),有五个 CpG 位点与新发 AF 相关。14 个先前报道的与全基因组显著相关的 AF 相关 SNP 每个都与至少一个 CpG 位点相关;最显著的关联是 CUX2 基因座的 rs6490029 和 cg10833066(P = 9.5×10)。总之,我们在基于社区的队列中进行了全基因组甲基化谱分析,并确定了七个与 AF 相关的甲基化特征。我们的研究表明,DNA 甲基化可能在 AF 心律失常发生中发挥重要作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4755/5220313/11e88e7365ef/srep40377-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4755/5220313/370e81e769d2/srep40377-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4755/5220313/44919d7679d7/srep40377-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4755/5220313/11e88e7365ef/srep40377-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4755/5220313/370e81e769d2/srep40377-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4755/5220313/44919d7679d7/srep40377-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4755/5220313/11e88e7365ef/srep40377-f3.jpg

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Whole blood gene expression and interleukin-6 levels.
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