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马铃薯根际生物防治菌株L13-6-12的全基因组序列

Complete genome sequence of strain L13-6-12, a biological control agent from the rhizosphere of potato.

作者信息

Zachow Christin, Müller Henry, Monk Jana, Berg Gabriele

机构信息

Austrian Centre of Industrial Biotechnology (ACIB GmbH), Petersgasse 14, 8010 Graz, Austria ; Institute of Environmental Biotechnology, Graz University of Technology, Petersgasse 12, 8010 Graz, Austria.

Institute of Environmental Biotechnology, Graz University of Technology, Petersgasse 12, 8010 Graz, Austria.

出版信息

Stand Genomic Sci. 2017 Jan 9;12:6. doi: 10.1186/s40793-016-0215-1. eCollection 2017.

Abstract

strain L13-6-12 is a rhizosphere colonizer of potato, lettuce and sugar beet. Previous studies have shown that this motile, Gram-negative, non-sporulating bacterium is an effective biocontrol agent against different phytopathogens. Here, we announce and describe the complete genome sequence of L13-6-12 consisting of a single 6.7 Mb circular chromosome that consists of 5773 protein coding genes and 85 RNA-only encoding genes. Genome analysis revealed genes encoding specialized functions for pathogen suppression, thriving in the rhizosphere and interacting with eukaryotic organisms.

摘要

菌株L13 - 6 - 12是马铃薯、生菜和甜菜根际的定殖菌。先前的研究表明,这种具运动性、革兰氏阴性、不产芽孢的细菌是一种针对不同植物病原体的有效生物防治剂。在此,我们公布并描述了L13 - 6 - 12的完整基因组序列,其由一条单一的670万个碱基对的环状染色体组成,该染色体包含5773个蛋白质编码基因和85个仅编码RNA的基因。基因组分析揭示了编码用于抑制病原体、在根际茁壮生长以及与真核生物相互作用的特殊功能的基因。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/88bb/5223336/91a267fbcf8f/40793_2016_215_Fig1_HTML.jpg

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