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肌红蛋白在朗道-金兹堡-威尔逊方法中的热变性。

Thermal unfolding of myoglobin in the Landau-Ginzburg-Wilson approach.

机构信息

Department of Physics and Astronomy, University of British Columbia, Vancouver, British Columbia V6T1Z4, Canada.

Faculty of Chemistry, University of Gdansk, Wita Stwosza 63, 80-308 Gdańsk, Poland.

出版信息

Phys Rev E. 2016 Dec;94(6-1):062405. doi: 10.1103/PhysRevE.94.062405. Epub 2016 Dec 16.

Abstract

The Landau-Ginzburg-Wilson paradigm is applied to model the low-temperature crystallographic Cα backbone structure of sperm whale myoglobin. The Glauber protocol is employed to simulate its response to an increase in ambient temperature. The myoglobin is found to unfold from its native state by a succession of α-helical intermediates, fully in line with the observed folding and unfolding patterns in denaturation experiments. In particular, a molten globule intermediate is identified with experimentally correct attributes. A detailed, experimentally testable contact map is constructed to characterize the specifics of the unfolding pathway, including the formation of long-range interactions. The results reveal how the unfolding process of a protein is driven by the interplay between, and a successive melting of, its modular secondary structure components.

摘要

朗道-金兹堡-威尔逊范式被应用于模拟抹香鲸肌红蛋白低温晶体学 Cα 骨架结构。格劳伯协议被用来模拟其对环境温度升高的响应。肌红蛋白被发现通过一系列的α-螺旋中间体从天然状态展开,这完全符合变性实验中观察到的折叠和展开模式。特别是,鉴定出一个具有实验正确属性的熔融球蛋白中间体。构建了一个详细的、可通过实验验证的接触图来描述展开途径的细节,包括长程相互作用的形成。结果揭示了蛋白质的展开过程是如何受到其模块二级结构组件的相互作用和连续熔融的驱动的。

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