Leelananda Sumudu P, Lindert Steffen
Department of Chemistry and Biochemistry, Ohio State University, Columbus, OH 43210, USA.
Beilstein J Org Chem. 2016 Dec 12;12:2694-2718. doi: 10.3762/bjoc.12.267. eCollection 2016.
The process for drug discovery and development is challenging, time consuming and expensive. Computer-aided drug discovery (CADD) tools can act as a virtual shortcut, assisting in the expedition of this long process and potentially reducing the cost of research and development. Today CADD has become an effective and indispensable tool in therapeutic development. The human genome project has made available a substantial amount of sequence data that can be used in various drug discovery projects. Additionally, increasing knowledge of biological structures, as well as increasing computer power have made it possible to use computational methods effectively in various phases of the drug discovery and development pipeline. The importance of in silico tools is greater than ever before and has advanced pharmaceutical research. Here we present an overview of computational methods used in different facets of drug discovery and highlight some of the recent successes. In this review, both structure-based and ligand-based drug discovery methods are discussed. Advances in virtual high-throughput screening, protein structure prediction methods, protein-ligand docking, pharmacophore modeling and QSAR techniques are reviewed.
药物发现与开发过程具有挑战性、耗时且成本高昂。计算机辅助药物发现(CADD)工具可充当虚拟捷径,助力加速这一漫长过程,并有可能降低研发成本。如今,CADD已成为治疗性药物开发中一种有效且不可或缺的工具。人类基因组计划提供了大量可用于各类药物发现项目的序列数据。此外,对生物结构的了解不断增加,以及计算机能力的提升,使得在药物发现与开发流程的各个阶段有效运用计算方法成为可能。计算机模拟工具的重要性比以往任何时候都更高,推动了药物研究的发展。在此,我们概述了药物发现不同方面所使用的计算方法,并突出了一些近期的成功案例。在本综述中,将讨论基于结构和基于配体的药物发现方法。对虚拟高通量筛选、蛋白质结构预测方法、蛋白质 - 配体对接、药效团建模和定量构效关系(QSAR)技术的进展进行了综述。