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通过对细胞进行全基因组RNA干扰筛选揭示对宿主蛋白水解高比率的依赖。

Reliance of on High Rates of Host Proteolysis Revealed by a Genome-Wide RNAi Screen of Cells.

作者信息

White Pamela M, Serbus Laura R, Debec Alain, Codina Adan, Bray Walter, Guichet Antoine, Lokey R Scott, Sullivan William

机构信息

Department of Molecular, Cell, and Developmental Biology, University of California, Santa Cruz, California 95064.

Department of Biological Sciences, Florida International University, Miami, Florida.

出版信息

Genetics. 2017 Apr;205(4):1473-1488. doi: 10.1534/genetics.116.198903. Epub 2017 Feb 3.

Abstract

are gram-negative, obligate, intracellular bacteria carried by a majority of insect species worldwide. Here we use a -infected cell line and genome-wide RNA interference (RNAi) screening to identify host factors that influence titer. By screening an RNAi library targeting 15,699 transcribed host genes, we identified 36 candidate genes that dramatically reduced titer and 41 that increased titer. Host gene knockdowns that reduced titer spanned a broad array of biological pathways including genes that influenced mitochondrial function and lipid metabolism. In addition, knockdown of seven genes in the host ubiquitin and proteolysis pathways significantly reduced titer. To test the relevance of these results, we found that drug and mutant inhibition of proteolysis reduced levels of in the oocyte. The presence of in either cell lines or oocytes dramatically alters the distribution and abundance of ubiquitinated proteins. Functional studies revealed that maintenance of titer relies on an intact host Endoplasmic Reticulum (ER)-associated protein degradation pathway (ERAD). Accordingly, electron microscopy studies demonstrated that is intimately associated with the host ER and dramatically alters the morphology of this organelle. Given lack essential amino acid biosynthetic pathways, the reliance of on high rates of host proteolysis via ubiquitination and the ERAD pathways may be a key mechanism for provisioning with amino acids. In addition, the reliance of on the ERAD pathway and disruption of ER morphology suggests a previously unsuspected mechanism for ' potent ability to prevent RNA virus replication.

摘要

是革兰氏阴性、专性、细胞内细菌,全球大多数昆虫物种都携带。在这里,我们使用一种感染的细胞系和全基因组RNA干扰(RNAi)筛选来鉴定影响滴度的宿主因子。通过筛选针对15699个转录宿主基因的RNAi文库,我们鉴定出36个显著降低滴度的候选基因和41个增加滴度的候选基因。降低滴度的宿主基因敲低涉及广泛的生物途径,包括影响线粒体功能和脂质代谢的基因。此外,宿主泛素和蛋白水解途径中七个基因的敲低显著降低了滴度。为了测试这些结果的相关性,我们发现蛋白水解的药物和突变抑制降低了卵母细胞中的水平。细胞系或卵母细胞中 的存在显著改变了泛素化蛋白的分布和丰度。功能研究表明,滴度的维持依赖于完整的宿主内质网(ER)相关蛋白降解途径(ERAD)。因此,电子显微镜研究表明 与宿主ER密切相关,并显著改变了该细胞器的形态。鉴于 缺乏必需氨基酸生物合成途径, 通过泛素化和ERAD途径对宿主高蛋白水解率的依赖可能是为 提供氨基酸的关键机制。此外, 对ERAD途径的依赖和ER形态的破坏提示了一种以前未被怀疑的机制,用于 的有效预防RNA病毒复制的能力。

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