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磷脂膜多尺度建模的平均极化势。

An averaged polarizable potential for multiscale modeling in phospholipid membranes.

机构信息

Department of Physics, Chemistry and Pharmacy, University of Southern Denmark, Odense M, DK-5230, Denmark.

Division of Theoretical Chemistry and Biology, School of Biotechnology, KTH Royal Institute of Technology, Stockholm, SE-106 91, Sweden.

出版信息

J Comput Chem. 2017 Apr 5;38(9):601-611. doi: 10.1002/jcc.24718. Epub 2017 Feb 3.

Abstract

A set of average atom-centered charges and polarizabilities has been developed for three types of phospholipids for use in polarizable embedding calculations. The lipids investigated are 1,2-dimyristoyl-sn-glycero-3-phosphocholine, 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine, and 1-palmitoyl-2-oleoyl-sn-glycerol-3-phospho-L-serine given their common use both in experimental and computational studies. The charges, and to a lesser extent the polarizabilities, are found to depend strongly on the molecular conformation of the lipids. Furthermore, the importance of explicit polarization is underlined for the description of larger assemblies of lipids, that is, membranes. In conclusion, we find that specially developed polarizable parameters are needed for embedding calculations in membranes, while common non-polarizable point-charge force fields usually perform well enough for structural and dynamical studies. © 2017 Wiley Periodicals, Inc.

摘要

已为三种类型的磷脂开发了一组平均原子中心电荷和极化率,用于可极化嵌入计算。所研究的脂质是 1,2-二肉豆蔻酰基-sn-甘油-3-磷酸胆碱、1-棕榈酰基-2-油酰基-sn-甘油-3-磷酸胆碱和 1-棕榈酰基-2-油酰基-sn-甘油-3-磷酸-L-丝氨酸,因为它们在实验和计算研究中都有共同的用途。电荷,在较小程度上还有极化率,被发现强烈依赖于脂质的分子构象。此外,还强调了对于较大脂质组装体(即膜)的描述,明确极化的重要性。总之,我们发现对于膜中的嵌入计算需要专门开发可极化参数,而常见的非极化点电荷力场通常足以用于结构和动力学研究。© 2017 威利父子公司

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