从室内环境分离出的8种细菌的基因组序列草图：H36菌株、H65菌株、H62菌株、H69菌株、H83菌株、H39菌株、H53菌株和H72菌株。
Draft genome sequences of eight bacteria isolated from the indoor environment: strain H36, strain H65, strain H62, strain H69, sp. strain H83, strain H39, sp. strain H53, and strain H72.
作者信息
Lymperopoulou Despoina S, Coil David A, Schichnes Denise, Lindow Steven E, Jospin Guillaume, Eisen Jonathan A, Adams Rachel I
机构信息
Department of Plant & Microbial Biology, University of California Berkeley, Berkeley, CA USA.
Genome Center, University of California Davis, Davis, USA.
出版信息
Stand Genomic Sci. 2017 Jan 31;12:17. doi: 10.1186/s40793-017-0223-9. eCollection 2017.
Abstract
We report here the draft genome sequences of eight bacterial strains of the genera , and . These isolates were obtained from aerosol sampling of bathrooms of five residences in the San Francisco Bay area. Taxonomic classifications as well as the genome sequence and gene annotation of the isolates are described. As part of the "Built Environment Reference Genome" project, these isolates and associated genome data provide valuable resources for studying the microbiology of the built environment.
摘要
我们在此报告了 、 和 属的八种细菌菌株的基因组序列草图。这些分离株是从旧金山湾区五处住宅的浴室空气采样中获得的。文中描述了这些分离株的分类学分类以及基因组序列和基因注释。作为“建筑环境参考基因组”项目的一部分，这些分离株及相关基因组数据为研究建筑环境中的微生物学提供了宝贵资源。
相似文献
1
Draft genome sequences of eight bacteria isolated from the indoor environment: strain H36, strain H65, strain H62, strain H69, sp. strain H83, strain H39, sp. strain H53, and strain H72.
Stand Genomic Sci. 2017 Jan 31;12:17. doi: 10.1186/s40793-017-0223-9. eCollection 2017.
2
Complete genome sequencing of three human clinical isolates of Staphylococcus caprae reveals virulence factors similar to those of S. epidermidis and S. capitis.
BMC Genomics. 2018 Nov 8;19(1):810. doi: 10.1186/s12864-018-5185-9.
3
Draft genome sequences of two opportunistic pathogenic strains of isolated from human patients.
Stand Genomic Sci. 2017 Aug 31;12:49. doi: 10.1186/s40793-017-0263-1. eCollection 2017.
4
Draft Genome Sequence of Microbacterium sp. Strain UCD-TDU (Phylum Actinobacteria).
Genome Announc. 2013 Mar 21;1(2):e0012013. doi: 10.1128/genomeA.00120-13.
5
Whole genome sequence and comparative genomic analysis of multidrug-resistant Staphylococcus capitis subsp. urealyticus strain LNZR-1.
Gut Pathog. 2014 Dec 20;6(1):45. doi: 10.1186/s13099-014-0045-x. eCollection 2014.
6
Methicillin resistance of airborne coagulase-negative staphylococci in homes of persons having contact with a hospital environment.
Am J Infect Control. 2009 Apr;37(3):177-82. doi: 10.1016/j.ajic.2008.09.013. Epub 2009 Jan 19.
7
Draft genome sequence data of sp. strain Be9 isolated from uranium-mill tailings porewaters.
Data Brief. 2020 May 19;31:105732. doi: 10.1016/j.dib.2020.105732. eCollection 2020 Aug.
8
High quality draft genome sequence of Staphylococcus cohnii subsp. cohnii strain hu-01.
Stand Genomic Sci. 2014 Mar 15;9(3):755-62. doi: 10.4056/sigs.5429581. eCollection 2014 Jun 15.
9
Draft genome sequence of a multidrug-resistant caprine isolate of Staphylococcus cohnii subsp. urealyticus from Tanzania encoding ermB, tet(K), dfrG, fusF and fosD.
J Glob Antimicrob Resist. 2019 Sep;18:163-165. doi: 10.1016/j.jgar.2019.07.006. Epub 2019 Jul 16.
10
Draft Genome Sequences of UCD-KL30, UCD-KL16, sp. Strain UCD-KL20, sp. Strain UCD-KL12, and sp. Strain UCD-KL21, Isolated from Seagrass.
Genome Announc. 2017 Mar 30;5(13):e00023-17. doi: 10.1128/genomeA.00023-17.
引用本文的文献
1
Emergence of Inducible Macrolide Resistance in Mycobacterium chelonae Due to Broad-Host-Range Plasmid and Chromosomal Variants of the Novel 23S rRNA Methylase Gene, (55).
J Clin Microbiol. 2023 Jul 20;61(7):e0042823. doi: 10.1128/jcm.00428-23. Epub 2023 Jun 22.
2
Molecular typing and antimicrobial resistance profiling of 33 mastitis-related Staphylococcus aureus isolates from cows in the Comarca Lagunera region of Mexico.
Sci Rep. 2021 Mar 25;11(1):6912. doi: 10.1038/s41598-021-86453-2.
3
Comparative Genomics Analysis Demonstrated a Link Between Staphylococci Isolated From Different Sources: A Possible Public Health Risk.
Front Microbiol. 2021 Feb 25;12:576696. doi: 10.3389/fmicb.2021.576696. eCollection 2021.
4
Comparative genomics of Bacteria commonly identified in the built environment.
BMC Genomics. 2019 Jan 28;20(1):92. doi: 10.1186/s12864-018-5389-z.
5
Microbes and associated soluble and volatile chemicals on periodically wet household surfaces.
Microbiome. 2017 Sep 26;5(1):128. doi: 10.1186/s40168-017-0347-6.
6
Mycobacterium iranicum bacteremia and hemophagocytic lymphohistiocytosis: a case report.
BMC Res Notes. 2017 Aug 8;10(1):372. doi: 10.1186/s13104-017-2684-8.
本文引用的文献
1
List of new names and new combinations previously effectively, but not validly, published.
Int J Syst Evol Microbiol. 2015 Nov;65(11):3763-3767. doi: 10.1099/ijsem.0.000632.
2
Sources of airborne microorganisms in the built environment.
Microbiome. 2015 Dec 22;3:78. doi: 10.1186/s40168-015-0144-z.
3
Rapid antibiotic-resistance predictions from genome sequence data for Staphylococcus aureus and Mycobacterium tuberculosis.
Nat Commun. 2015 Dec 21;6:10063. doi: 10.1038/ncomms10063.
4
Relative and contextual contribution of different sources to the composition and abundance of indoor air bacteria in residences.
Microbiome. 2015 Dec 10;3:61. doi: 10.1186/s40168-015-0128-z.
5
Insights on virulence from the complete genome of Staphylococcus capitis.
Front Microbiol. 2015 Sep 23;6:980. doi: 10.3389/fmicb.2015.00980. eCollection 2015.
6
The ecology of microscopic life in household dust.
Proc Biol Sci. 2015 Sep 7;282(1814). doi: 10.1098/rspb.2015.1139.
7
Swabs to genomes: a comprehensive workflow.
PeerJ. 2015 May 14;3:e960. doi: 10.7717/peerj.960. eCollection 2015.
8
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes.
Genome Res. 2015 Jul;25(7):1043-55. doi: 10.1101/gr.186072.114. Epub 2015 May 14.
9
The impact of triclosan on the spread of antibiotic resistance in the environment.
Front Microbiol. 2015 Jan 15;5:780. doi: 10.3389/fmicb.2014.00780. eCollection 2014.
10
Comparative genomic analysis of Mycobacterium iranicum UM_TJL against representative mycobacterial species suggests its environmental origin.
Sci Rep. 2014 Nov 24;4:7169. doi: 10.1038/srep07169.
Zotero 插件