Nava-Sedeño J M, Hatzikirou H, Peruani F, Deutsch A
Center for Information Services and High Performance Computing, Technische Universität Dresden, Nöthnitzer Straße 46, 01062, Dresden, Germany.
Department of Systems Immunology and Braunschweig Integrated Centre of Systems Biology, Helmholtz Center for Infection Research, Inhoffenstraße 7, 38124, Braunschweig, Germany.
J Math Biol. 2017 Nov;75(5):1075-1100. doi: 10.1007/s00285-017-1106-9. Epub 2017 Feb 27.
Cellular automata (CA) are discrete time, space, and state models which are extensively used for modeling biological phenomena. CA are "on-lattice" models with low computational demands. In particular, lattice-gas cellular automata (LGCA) have been introduced as models of single and collective cell migration. The interaction rule dictates the behavior of a cellular automaton model and is critical to the model's biological relevance. The LGCA model's interaction rule has been typically chosen phenomenologically. In this paper, we introduce a method to obtain lattice-gas cellular automaton interaction rules from physically-motivated "off-lattice" Langevin equation models for migrating cells. In particular, we consider Langevin equations related to single cell movement (movement of cells independent of each other) and collective cell migration (movement influenced by cell-cell interactions). As examples of collective cell migration, two different alignment mechanisms are studied: polar and nematic alignment. Both kinds of alignment have been observed in biological systems such as swarms of amoebae and myxobacteria. Polar alignment causes cells to align their velocities parallel to each other, whereas nematic alignment drives cells to align either parallel or antiparallel to each other. Under appropriate assumptions, we have derived the LGCA transition probability rule from the steady-state distribution of the off-lattice Fokker-Planck equation. Comparing alignment order parameters between the original Langevin model and the derived LGCA for both mechanisms, we found different areas of agreement in the parameter space. Finally, we discuss potential reasons for model disagreement and propose extensions to the CA rule derivation methodology.
细胞自动机(CA)是离散时间、空间和状态的模型,被广泛用于对生物现象进行建模。CA是计算需求较低的“晶格”模型。特别地,晶格气细胞自动机(LGCA)已被引入作为单个细胞和集体细胞迁移的模型。相互作用规则决定了细胞自动机模型的行为,并且对于模型的生物学相关性至关重要。LGCA模型的相互作用规则通常是从现象学角度选择的。在本文中,我们介绍一种从用于迁移细胞的具有物理动机的“非晶格”朗之万方程模型中获取晶格气细胞自动机相互作用规则的方法。特别地,我们考虑与单细胞运动(细胞彼此独立运动)和集体细胞迁移(受细胞间相互作用影响的运动)相关的朗之万方程。作为集体细胞迁移的例子,研究了两种不同的排列机制:极性排列和向列排列。在诸如变形虫群和黏细菌等生物系统中都观察到了这两种排列。极性排列使细胞将其速度彼此平行排列,而向列排列驱使细胞彼此平行或反平行排列。在适当的假设下,我们从非晶格福克 - 普朗克方程的稳态分布中推导出了LGCA转移概率规则。比较原始朗之万模型和针对这两种机制推导的LGCA之间的排列序参量,我们在参数空间中发现了不同的一致区域。最后,我们讨论了模型不一致的潜在原因,并提出了对CA规则推导方法的扩展。