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二氢硫辛酰胺脱氢酶与二氧化钛结合中协同相互作用的参与——一个假定结合位点的定位

The involvement of coordinative interactions in the binding of dihydrolipoamide dehydrogenase to titanium dioxide-Localization of a putative binding site.

作者信息

Dayan Avraham, Babin Gilad, Ganoth Assaf, Kayouf Nivin Samir, Nitoker Eliaz Neta, Mukkala Srijana, Tsfadia Yossi, Fleminger Gideon

机构信息

Molecular Microbiology and Biotechnology, Tel Aviv University, Ramat Aviv, Israel.

Biochemistry and Molecular Biology, The George S. Wise Faculty of Life Sciences, Tel Aviv University, Ramat Aviv, Israel.

出版信息

J Mol Recognit. 2017 Aug;30(8). doi: 10.1002/jmr.2617. Epub 2017 Feb 28.

DOI:10.1002/jmr.2617
PMID:28247484
Abstract

Titanium (Ti) and its alloys are widely used in orthodontic and orthopedic implants by virtue to their high biocompatibility, mechanical strength, and high resistance to corrosion. Biointegration of the implants with the tissue requires strong interactions, which involve biological molecules, proteins in particular, with metal oxide surfaces. An exocellular high-affinity titanium dioxide (TiO )-binding protein (TiBP), purified from Rhodococcus ruber, has been previously studied in our lab. This protein was shown to be homologous with the orthologous cytoplasmic rhodococcal dihydrolipoamide dehydrogenase (rhDLDH). We have found that rhDLDH and its human homolog (hDLDH) share the TiO -binding capabilities with TiBP. Intrigued by the unique TiO -binding properties of hDLDH, we anticipated that it may serve as a molecular bridge between Ti-based medical structures and human tissues. The objective of the current study was to locate the region and the amino acids of the protein that mediate the protein-TiO surface interaction. We demonstrated the role of acidic amino acids in the nonelectrostatic enzyme/dioxide interactions at neutral pH. The observation that the interaction of DLDH with various metal oxides is independent of their isoelectric values strengthens this notion. DLDH does not lose its enzymatic activity upon binding to TiO , indicating that neither the enzyme undergoes major conformational changes nor the TiO binding site is blocked. Docking predictions suggest that both rhDLDH and hDLDH bind TiO through similar regions located far from the active site and the dimerization sites. The putative TiO -binding regions of both the bacterial and human enzymes were found to contain a CHED (Cys, His, Glu, Asp) motif, which has been shown to participate in metal-binding sites in proteins.

摘要

钛(Ti)及其合金因其高生物相容性、机械强度和高耐腐蚀性而广泛应用于正畸和骨科植入物。植入物与组织的生物整合需要强烈的相互作用,这涉及生物分子,特别是蛋白质与金属氧化物表面的相互作用。先前在我们实验室中研究过从红球菌中纯化的一种细胞外高亲和力二氧化钛(TiO₂)结合蛋白(TiBP)。该蛋白被证明与直系同源的细胞质红球菌二氢硫辛酰胺脱氢酶(rhDLDH)同源。我们发现rhDLDH及其人类同源物(hDLDH)与TiBP具有相同的TiO₂结合能力。受hDLDH独特的TiO₂结合特性的启发,我们预计它可能作为钛基医疗结构与人体组织之间的分子桥梁。本研究的目的是确定介导蛋白质与TiO₂表面相互作用的蛋白质区域和氨基酸。我们证明了酸性氨基酸在中性pH下非静电酶/二氧化物相互作用中的作用。DLDH与各种金属氧化物的相互作用与其等电值无关这一观察结果强化了这一观点。DLDH与TiO₂结合后不会失去其酶活性,这表明酶既不会发生重大构象变化,TiO₂结合位点也不会被阻断。对接预测表明,rhDLDH和hDLDH都通过远离活性位点和二聚化位点的相似区域结合TiO₂。发现细菌和人类酶的推定TiO₂结合区域都含有一个CHED(半胱氨酸、组氨酸、谷氨酸、天冬氨酸)基序,该基序已被证明参与蛋白质中的金属结合位点。

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