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新型真菌 D-葡萄糖醛酸途径中编码 2-酮-L-古洛糖酸还原酶和 L-艾杜糖酸 5-脱氢酶的成簇基因。

Clustered Genes Encoding 2-Keto-l-Gulonate Reductase and l-Idonate 5-Dehydrogenase in the Novel Fungal d-Glucuronic Acid Pathway.

作者信息

Kuivanen Joosu, Arvas Mikko, Richard Peter

机构信息

VTT Technical Research Centre of Finland Ltd Espoo, Finland.

出版信息

Front Microbiol. 2017 Feb 14;8:225. doi: 10.3389/fmicb.2017.00225. eCollection 2017.

Abstract

D-Glucuronic acid is a biomass component that occurs in plant cell wall polysaccharides and is catabolized by saprotrophic microorganisms including fungi. A pathway for D-glucuronic acid catabolism in fungal microorganisms is only partly known. In the filamentous fungus , the enzymes that are known to be part of the pathway are the NADPH requiring D-glucuronic acid reductase forming L-gulonate and the NADH requiring 2-keto-L-gulonate reductase that forms L-idonate. With the aid of RNA sequencing we identified two more enzymes of the pathway. The first is a NADPH requiring 2-keto-L-gulonate reductase that forms L-idonate, GluD. The second is a NAD requiring L-idonate 5-dehydrogenase forming 5-keto-gluconate, GluE. The genes coding for these two enzymes are clustered and share the same bidirectional promoter. The GluD is an enzyme with a strict requirement for NADP/NADPH as cofactors. The k for 2-keto-L-gulonate and L-idonate is 21.4 and 1.1 s, and the K 25.3 and 12.6 mM, respectively, when using the purified protein. In contrast, the GluE has a strict requirement for NAD/NADH. The k for L-idonate and 5-keto-D-gluconate is 5.5 and 7.2 s, and the K 30.9 and 8.4 mM, respectively. These values also refer to the purified protein. The deletion resulted in accumulation of 2-keto-L-gulonate in the liquid cultivation while the deletion resulted in reduced growth and cessation of the D-glucuronic acid catabolism.

摘要

D-葡萄糖醛酸是一种存在于植物细胞壁多糖中的生物质成分,可被包括真菌在内的腐生微生物分解代谢。真菌微生物中D-葡萄糖醛酸分解代谢的途径仅部分为人所知。在丝状真菌中,已知该途径的组成酶包括需要NADPH的D-葡萄糖醛酸还原酶,其形成L-古洛糖酸;以及需要NADH的2-酮-L-古洛糖酸还原酶,其形成L-艾杜糖酸。借助RNA测序,我们又鉴定出了该途径的另外两种酶。第一种是需要NADPH的2-酮-L-古洛糖酸还原酶,其形成L-艾杜糖酸,即GluD。第二种是需要NAD的L-艾杜糖酸5-脱氢酶,其形成5-酮-D-葡萄糖酸,即GluE。编码这两种酶的基因成簇排列,并共享同一个双向启动子。GluD是一种对NADP/NADPH作为辅因子有严格要求的酶。使用纯化蛋白时,其对2-酮-L-古洛糖酸和L-艾杜糖酸的k值分别为21.4和1.1 s,K值分别为25.3和12.6 mM。相比之下,GluE对NAD/NADH有严格要求。其对L-艾杜糖酸和5-酮-D-葡萄糖酸的k值分别为5.5和7.2 s,K值分别为30.9和8.4 mM。这些值也适用于纯化蛋白。缺失导致液体培养中2-酮-L-古洛糖酸积累,而缺失导致生长减少和D-葡萄糖醛酸分解代谢停止。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3480/5306355/3d7b1503d42b/fmicb-08-00225-g001.jpg

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