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胸腺嘧啶在二维氮化硼结构上的吸附:第一性原理研究。

Thymine adsorption on two-dimensional boron nitride structures: first-principles studies.

作者信息

Castro-Medina J, García-Toral D, López-Fuentes M, Sánchez-Castillo A, Torres-Morales S, de la Garza L Morales, Cocoletzi Gregorio H

机构信息

Instituto de Física 'Luís Rivera Terrazas', Benemérita Universidad Autónoma de Puebla, Apartado Postal J-48, Puebla, 72570, Mexico.

Facultad de Ingeniería Química, Benemérita Universidad Autónoma de Puebla, Av. San Claudio y 18 Sur S/N Edificio106A C.U. San Manuel, 72570, Puebla, Mexico.

出版信息

J Mol Model. 2017 Apr;23(4):109. doi: 10.1007/s00894-017-3280-5. Epub 2017 Mar 11.

DOI:10.1007/s00894-017-3280-5
PMID:28285442
Abstract

First-principles total-energy calculations were performed to investigate the structural and electronic properties of thymine (T) adsorption on pristine and Al-doped two-dimensional hexagonal boron nitride (2D-hBN) surfaces. Periodic density functional theory, as developed in the PWscf code of the quantum espresso package, was applied. The pseudopotential theory was used to deal with electron-ion interactions. The generalized gradient approximation was applied to treat the exchange-correlation energies. Van der Waals interactions were incorporated in the calculations. Considering T as an elongated molecule and the interactions through one oxygen atom of the molecule ring, two geometries were explored in pristine and Al-doped systems: in (1) the ring side O interacts with B, and (2) the O at the molecule end interacting with the B. The pristine case yields (4 × 4-a), (5 × 5-b) and (6 × 6-b) as the ground states, , while the doped system shows (4 × 4-a), (5 × 5-a) and (6 × 6-a) as the ground states. Calculations of the adsorption energies indicate chemisorption. Doping enhances the surface reactivity, inducing larger binding energies. The total density of states (DOS) was calculated and interpreted with the aid of the projected DOS. Below the Fermi energy, the DOS graphs indicate that p orbitals make the largest contributions. Above the Fermi level, the DOS is formed mainly by -s and H-s orbitals. The DOS graphs indicate that the structures have non-semiconductor behavior.

摘要

进行了第一性原理全能量计算,以研究胸腺嘧啶(T)吸附在原始和铝掺杂的二维六方氮化硼(2D-hBN)表面上的结构和电子性质。应用了量子 espresso 软件包的 PWscf 代码中开发的周期性密度泛函理论。采用赝势理论处理电子-离子相互作用。应用广义梯度近似来处理交换关联能。计算中纳入了范德华相互作用。将 T 视为一个拉长的分子,并考虑通过分子环的一个氧原子的相互作用,在原始和铝掺杂体系中探索了两种几何构型:(1)环侧的 O 与 B 相互作用,(2)分子末端的 O 与 B 相互作用。原始体系的基态为(4×4-a)、(5×5-b)和(6×6-b),而掺杂体系的基态为(4×4-a)、(5×5-a)和(6×6-a)。吸附能的计算表明发生了化学吸附。掺杂增强了表面反应性,导致更大的结合能。计算了总态密度(DOS)并借助投影 DOS 进行了解释。在费米能量以下,DOS 图表明 p 轨道贡献最大。在费米能级以上,DOS 主要由-s 和 H-s 轨道形成。DOS 图表明这些结构具有非半导体行为。

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