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微游动者-示踪剂相互作用的格子玻尔兹曼模拟

Lattice-Boltzmann simulations of microswimmer-tracer interactions.

作者信息

de Graaf Joost, Stenhammar Joakim

机构信息

SUPA, School of Physics and Astronomy, University of Edinburgh, King's Buildings, Peter Guthrie Tait Road, Edinburgh, EH9 3FD, United Kingdom.

Division of Physical Chemistry, Lund University, Box 124, S-221 00 Lund, Sweden.

出版信息

Phys Rev E. 2017 Feb;95(2-1):023302. doi: 10.1103/PhysRevE.95.023302. Epub 2017 Feb 1.

Abstract

Hydrodynamic interactions in systems composed of self-propelled particles, such as swimming microorganisms and passive tracers, have a significant impact on the tracer dynamics compared to the equivalent "dry" sample. However, such interactions are often difficult to take into account in simulations due to their computational cost. Here, we perform a systematic investigation of swimmer-tracer interaction using an efficient force-counterforce-based lattice-Boltzmann (LB) algorithm [De Graaf et al., J. Chem. Phys. 144, 134106 (2016)JCPSA60021-960610.1063/1.4944962] in order to validate its ability to capture the relevant low-Reynolds-number physics. We show that the LB algorithm reproduces far-field theoretical results well, both in a system with periodic boundary conditions and in a spherical cavity with no-slip walls, for which we derive expressions here. The force-lattice coupling of the LB algorithm leads to a "smearing out" of the flow field, which strongly perturbs the tracer trajectories at close swimmer-tracer separations, and we analyze how this effect can be accurately captured using a simple renormalized hydrodynamic theory. Finally, we show that care must be taken when using LB algorithms to simulate systems of self-propelled particles, since its finite momentum transport time can lead to significant deviations from theoretical predictions based on Stokes flow. These insights should prove relevant to the future study of large-scale microswimmer suspensions using these methods.

摘要

在由自推进粒子组成的系统中,如游动的微生物和被动示踪剂,与等效的“干燥”样本相比,流体动力学相互作用对示踪剂动力学有显著影响。然而,由于计算成本,这种相互作用在模拟中往往难以考虑。在此,我们使用一种基于力-反力的高效格子玻尔兹曼(LB)算法[De Graaf等人,《化学物理杂志》144, 134106 (2016)JCPSA60021-960610.1063/1.4944962]对游动者-示踪剂相互作用进行系统研究,以验证其捕捉相关低雷诺数物理现象的能力。我们表明,LB算法在具有周期性边界条件的系统和具有无滑移壁的球形腔中都能很好地重现远场理论结果,我们在此推导出了相关表达式。LB算法的力-格子耦合导致流场“模糊”,这在游动者与示踪剂距离较近时强烈干扰示踪剂轨迹,我们分析了如何使用简单的重整化流体动力学理论准确捕捉这种效应。最后,我们表明在使用LB算法模拟自推进粒子系统时必须谨慎,因为其有限的动量传输时间可能导致与基于斯托克斯流的理论预测有显著偏差。这些见解对于未来使用这些方法研究大规模微游动者悬浮液应该是相关的。

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