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IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth.IDBA-UD：一个用于具有高度不均匀深度的单细胞和宏基因组测序数据的从头组装程序。
Bioinformatics. 2012 Jun 1;28(11):1420-8. doi: 10.1093/bioinformatics/bts174. Epub 2012 Apr 11.
2
Genome-scale diversity and niche adaptation analysis of Lactococcus lactis by comparative genome hybridization using multi-strain arrays.利用多菌株阵列比较基因组杂交分析乳球菌的全基因组多样性和生态位适应。
Microb Biotechnol. 2011 May;4(3):383-402. doi: 10.1111/j.1751-7915.2011.00247.x. Epub 2011 Feb 21.
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Chromosomal diversity in Lactococcus lactis and the origin of dairy starter cultures.乳球菌的染色体多样性与乳制品发酵剂的起源。
Genome Biol Evol. 2010;2:729-44. doi: 10.1093/gbe/evq056. Epub 2010 Sep 16.
4
Lactococcus lactis subsp. tructae subsp. nov. isolated from the intestinal mucus of brown trout (Salmo trutta) and rainbow trout (Oncorhynchus mykiss).乳球菌乳亚种 tructae 亚种。从褐鳟（Salmo trutta）和虹鳟（Oncorhynchus mykiss）的肠道粘液中分离出来。
Int J Syst Evol Microbiol. 2011 Aug;61(Pt 8):1894-1898. doi: 10.1099/ijs.0.023945-0. Epub 2010 Sep 10.
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The RAST Server: rapid annotations using subsystems technology.RAST服务器：使用子系统技术进行快速注释。
BMC Genomics. 2008 Feb 8;9:75. doi: 10.1186/1471-2164-9-75.
6
Natural diversity and adaptive responses of Lactococcus lactis.乳酸乳球菌的自然多样性和适应性反应。
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7
Complete sequences of four plasmids of Lactococcus lactis subsp. cremoris SK11 reveal extensive adaptation to the dairy environment.乳酸乳球菌乳脂亚种SK11的四个质粒的完整序列揭示了其对乳制品环境的广泛适应性。
Appl Environ Microbiol. 2005 Dec;71(12):8371-82. doi: 10.1128/AEM.71.12.8371-8382.2005.
8
Bacteriocins: developing innate immunity for food.细菌素：为食品开发天然免疫
Nat Rev Microbiol. 2005 Oct;3(10):777-88. doi: 10.1038/nrmicro1273.
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11个亚种菌株的基因组序列草图

Draft Genome Sequences of 11 subsp. Strains.

作者信息

Wels Michiel, Backus Lennart, Boekhorst Jos, Dijkstra Annereinou, Beerthuyzen Marke, Siezen Roland J, Bachmann Herwig, van Hijum Sacha A F T

机构信息

Kluyver Centre for Industrial Fermentations, NIZO, Ede, The Netherlands

Centre for Molecular and Biomolecular Informatics, Radboud Institute for Molecular Life Sciences, Radboud umc, Nijmegen, The Netherlands.

出版信息

Genome Announc. 2017 Mar 16;5(11):e01739-16. doi: 10.1128/genomeA.01739-16.

DOI:10.1128/genomeA.01739-16
PMID:28302789
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5356066/
Abstract

The lactic acid bacterium is widely used for the fermentation of dairy products. Here, we present the draft genome sequences of 11 subsp. strains isolated from different environments.

摘要

乳酸菌被广泛用于乳制品发酵。在此，我们展示了从不同环境中分离出的11个亚种菌株的基因组序列草图。