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在人类粪便样本中检测到的三种甜瓜坏死斑点病毒的基因组特征分析

Genomic Characterization of Three Melon Necrotic Spot Viruses Detected in Human Stool Specimens.

作者信息

Marine Rachel, Castro Christina, Magaña Laura, Ng Terry Fei Fan, Aswath Kshama, Collins Nikail, Park Geun Woo, Vinjé Jan, Oberste M Steven

机构信息

Division of Viral Diseases, Centers for Disease Control and Prevention, Atlanta, Georgia, USA

Oak Ridge Institute for Science and Education, Oak Ridge, Tennessee, USA.

出版信息

Genome Announc. 2017 Mar 16;5(11):e01758-16. doi: 10.1128/genomeA.01758-16.

DOI:10.1128/genomeA.01758-16
PMID:28302791
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5356068/
Abstract

The complete coding sequences of three melon necrotic spot viruses (MNSVs) were obtained from viral metagenomics of stool samples from patients with acute gastroenteritis. These genomes were most similar to Spanish strains sequenced in 2003 and a novel MNSV watermelon strain in 2014.

摘要

从急性肠胃炎患者粪便样本的病毒宏基因组学中获得了三种甜瓜坏死斑病毒(MNSV)的完整编码序列。这些基因组与2003年测序的西班牙毒株以及2014年一种新型MNSV西瓜毒株最为相似。

相似文献

1
Genomic Characterization of Three Melon Necrotic Spot Viruses Detected in Human Stool Specimens.在人类粪便样本中检测到的三种甜瓜坏死斑点病毒的基因组特征分析
Genome Announc. 2017 Mar 16;5(11):e01758-16. doi: 10.1128/genomeA.01758-16.
2
Genome Analysis of Melon Necrotic Spot Virus Incursions and Seed Interceptions in Australia.澳大利亚瓜类坏死斑点病毒入侵和种子截获的基因组分析。
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Characterization of Melon necrotic spot virus Occurring on Watermelon in Korea.韩国西瓜上出现的甜瓜坏死斑病毒的特性分析。
Plant Pathol J. 2015 Dec;31(4):379-87. doi: 10.5423/PPJ.OA.11.2014.0124. Epub 2015 Dec 30.
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Transcriptomic profiling of Melon necrotic spot virus-infected melon plants revealed virus strain and plant cultivar-specific alterations.甜瓜坏死斑病毒感染的甜瓜植株的转录组分析揭示了病毒株系和植物品种特异性变化。
BMC Genomics. 2016 Jun 7;17:429. doi: 10.1186/s12864-016-2772-5.
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Molecular characterization of a Melon necrotic spot virus strain that overcomes the resistance in melon and nonhost plants.一种克服甜瓜及非寄主植物抗性的甜瓜坏死斑点病毒株系的分子特征分析
Mol Plant Microbe Interact. 2004 Jun;17(6):668-75. doi: 10.1094/MPMI.2004.17.6.668.
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Spanish Melon necrotic spot virus Isolate Overcomes the Resistance Conferred by the Recessive nsv Gene of Melon.西班牙甜瓜坏死斑点病毒分离株克服了甜瓜隐性nsv基因赋予的抗性。
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First Report of Melon necrotic spot virus in Panama.巴拿马首次发现甜瓜坏死斑点病毒报告。
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A new strain of Melon necrotic spot virus that is unable to systemically infect Cucumis melo.一种无法系统性感染甜瓜的甜瓜坏死斑病毒新毒株。
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Nucleotide sequence and infectious transcripts from a full-length cDNA clone of the carmovirus Melon necrotic spot virus.甜瓜坏死斑点病毒(一种香石竹潜隐病毒)全长cDNA克隆的核苷酸序列及感染性转录本
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Nucleotide sequence and genomic organization of melon necrotic spot virus.甜瓜坏死斑点病毒的核苷酸序列与基因组结构
J Gen Virol. 1990 Sep;71 ( Pt 9):1887-96. doi: 10.1099/0022-1317-71-9-1887.

本文引用的文献

1
Complete Genome Sequence of an Emerging Melon Necrotic Spot Virus Isolate Infecting Greenhouse Cucumber in North America.一种在北美感染温室黄瓜的新兴甜瓜坏死斑病毒分离株的全基因组序列
Genome Announc. 2015 Jul 16;3(4):e00775-15. doi: 10.1128/genomeA.00775-15.
2
A metagenomics and case-control study to identify viruses associated with bovine respiratory disease.一项用于鉴定与牛呼吸道疾病相关病毒的宏基因组学和病例对照研究。
J Virol. 2015 May;89(10):5340-9. doi: 10.1128/JVI.00064-15. Epub 2015 Mar 4.
3
Interfamilial recombination between viruses led to acquisition of a novel translation-enhancing RNA element that allows resistance breaking.家族间病毒重组导致获得了一种新的翻译增强 RNA 元件,使其能够突破耐药性。
New Phytol. 2014 Apr;202(1):233-246. doi: 10.1111/nph.12650. Epub 2013 Dec 24.
4
Pepper mild mottle virus, a plant virus associated with specific immune responses, Fever, abdominal pains, and pruritus in humans.胡椒轻斑驳病毒,一种与特定免疫反应相关的植物病毒,可引起人类发热、腹痛和瘙痒。
PLoS One. 2010 Apr 6;5(4):e10041. doi: 10.1371/journal.pone.0010041.
5
A new strain of Melon necrotic spot virus that is unable to systemically infect Cucumis melo.一种无法系统性感染甜瓜的甜瓜坏死斑病毒新毒株。
Phytopathology. 2008 Nov;98(11):1165-70. doi: 10.1094/PHYTO-98-11-1165.
6
Functional analysis of the five melon necrotic spot virus genome-encoded proteins.五种甜瓜坏死斑点病毒基因组编码蛋白的功能分析。
J Gen Virol. 2006 Aug;87(Pt 8):2371-2380. doi: 10.1099/vir.0.81793-0.
7
RNA viral community in human feces: prevalence of plant pathogenic viruses.人类粪便中的RNA病毒群落:植物致病病毒的流行情况
PLoS Biol. 2006 Jan;4(1):e3. doi: 10.1371/journal.pbio.0040003.
8
Comparative study on genomes of two Japanese melon necrotic spot virus isolates.
Acta Virol. 2000 Dec;44(6):309-14.