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使用连续自我对照病例系列进行药物重新定位计算

Computational Drug Repositioning Using Continuous Self-Controlled Case Series.

作者信息

Kuang Zhaobin, Thomson James, Caldwell Michael, Peissig Peggy, Stewart Ron, Page David

机构信息

University of Wisconsin.

Morgridge Institute.

出版信息

KDD. 2016 Aug;2016:491-500. doi: 10.1145/2939672.2939715.

DOI:10.1145/2939672.2939715
PMID:28316874
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5351812/
Abstract

Computational Drug Repositioning (CDR) is the task of discovering potential new indications for existing drugs by mining large-scale heterogeneous drug-related data sources. Leveraging the patient-level temporal ordering information between numeric physiological measurements and various drug prescriptions provided in Electronic Health Records (EHRs), we propose a Continuous Self-controlled Case Series (CSCCS) model for CDR. As an initial evaluation, we look for drugs that can control Fasting Blood Glucose (FBG) level in our experiments. Applying CSCCS to the Marshfield Clinic EHR, well-known drugs that are indicated for controlling blood glucose level are rediscovered. Furthermore, some drugs with recent literature support for the potential effect of blood glucose level control are also identified.

摘要

计算药物重新定位(CDR)是通过挖掘大规模异构药物相关数据源来发现现有药物潜在新适应症的任务。利用电子健康记录(EHR)中提供的数字生理测量值和各种药物处方之间的患者级时间顺序信息,我们提出了一种用于CDR的连续自我对照病例系列(CSCCS)模型。作为初步评估,我们在实验中寻找能够控制空腹血糖(FBG)水平的药物。将CSCCS应用于马什菲尔德诊所的EHR,重新发现了用于控制血糖水平的知名药物。此外,还识别出了一些近期文献支持对血糖水平控制有潜在作用的药物。

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本文引用的文献

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A survey of current trends in computational drug repositioning.计算药物重新定位的当前趋势调查。
Brief Bioinform. 2016 Jan;17(1):2-12. doi: 10.1093/bib/bbv020. Epub 2015 Mar 31.
2
Six cases of (severe) hypoglycaemia associated with gabapentin use in both diabetic and non-diabetic patients.6例糖尿病患者和非糖尿病患者使用加巴喷丁后出现(严重)低血糖的病例。
Br J Clin Pharmacol. 2015 May;79(5):870-1. doi: 10.1111/bcp.12548.
3
Fenofibrate and dipyridamole treatments in low-doses either alone or in combination blunted the development of nephropathy in diabetic rats.非诺贝特和双嘧达莫低剂量单独或联合治疗可减轻糖尿病大鼠肾病的发展。
Pharmacol Res. 2014 Dec;90:36-47. doi: 10.1016/j.phrs.2014.08.008. Epub 2014 Sep 27.
4
Validating drug repurposing signals using electronic health records: a case study of metformin associated with reduced cancer mortality.使用电子健康记录验证药物重新利用信号:二甲双胍与降低癌症死亡率相关的案例研究。
J Am Med Inform Assoc. 2015 Jan;22(1):179-91. doi: 10.1136/amiajnl-2014-002649. Epub 2014 Jul 22.
5
Use of Fixed Effects Models to Analyze Self-Controlled Case Series Data in Vaccine Safety Studies.在疫苗安全性研究中使用固定效应模型分析自控病例系列数据。
J Biom Biostat. 2012 Apr 19;Suppl 7:006. doi: 10.4172/2155-6180.s7-006.
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Multiple self-controlled case series for large-scale longitudinal observational databases.针对大规模纵向观测数据库的多个自我对照病例系列。
Biometrics. 2013 Dec;69(4):893-902. doi: 10.1111/biom.12078. Epub 2013 Oct 11.
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