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利用社交媒体数据进行药物重新定位以加速药物开发:帕金森病的计算研究

Drug Repositioning to Accelerate Drug Development Using Social Media Data: Computational Study on Parkinson Disease.

作者信息

Zhao Mengnan, Yang Christopher C

机构信息

College of Computing and Informatics, Drexel University, Philadelphia, PA, United States.

出版信息

J Med Internet Res. 2018 Oct 11;20(10):e271. doi: 10.2196/jmir.9646.

DOI:10.2196/jmir.9646
PMID:30309833
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6231748/
Abstract

BACKGROUND

Due to the high cost and low success rate in new drug development, systematic drug repositioning methods are exploited to find new indications for existing drugs.

OBJECTIVE

We sought to propose a new computational drug repositioning method to identify repositioning drugs for Parkinson disease (PD).

METHODS

We developed a novel heterogeneous network mining repositioning method that constructed a 3-layer network of disease, drug, and adverse drug reaction and involved user-generated data from online health communities to identify potential candidate drugs for PD.

RESULTS

We identified 44 non-Parkinson drugs by using the proposed approach, with data collected from both pharmaceutical databases and online health communities. Based on the further literature analysis, we found literature evidence for 28 drugs.

CONCLUSIONS

In summary, the proposed heterogeneous network mining repositioning approach is promising for identifying repositioning candidates for PD. It shows that adverse drug reactions are potential intermediaries to reveal relationships between disease and drug.

摘要

背景

由于新药开发成本高且成功率低,因此采用系统的药物重新定位方法来寻找现有药物的新适应症。

目的

我们试图提出一种新的计算药物重新定位方法,以识别用于帕金森病(PD)的重新定位药物。

方法

我们开发了一种新颖的异质网络挖掘重新定位方法,构建了疾病、药物和药物不良反应的三层网络,并纳入来自在线健康社区的用户生成数据,以识别PD的潜在候选药物。

结果

通过使用所提出的方法,我们识别出44种非帕金森病药物,数据来自制药数据库和在线健康社区。基于进一步的文献分析,我们发现了28种药物的文献证据。

结论

总之,所提出的异质网络挖掘重新定位方法在识别PD的重新定位候选药物方面很有前景。它表明药物不良反应是揭示疾病与药物之间关系的潜在中介。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bf11/6231748/87486e7ded84/jmir_v20i10e271_fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bf11/6231748/bff610cb6c58/jmir_v20i10e271_fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bf11/6231748/87486e7ded84/jmir_v20i10e271_fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bf11/6231748/bff610cb6c58/jmir_v20i10e271_fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bf11/6231748/87486e7ded84/jmir_v20i10e271_fig2.jpg

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本文引用的文献

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A Case of Parkinson Disease With Both Visual Hallucination and Pain Improved by Gabapentin.1例帕金森病伴视幻觉和疼痛经加巴喷丁治疗后改善
Clin Neuropharmacol. 2016 Jan-Feb;39(1):55-6. doi: 10.1097/WNF.0000000000000122.
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Predicting beneficial effects of atomoxetine and citalopram on response inhibition in Parkinson's disease with clinical and neuroimaging measures.运用临床和神经影像学测量方法预测托莫西汀和西酞普兰对帕金森病反应抑制的有益作用。
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Trajectories of recovery in depressed Parkinson's disease patients treated with paroxetine or venlafaxine.
基于药物结构相似性的社交媒体中不规范用药自动分类的可转移性:自然语言处理方法。
J Med Internet Res. 2023 May 3;25:e44870. doi: 10.2196/44870.
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Drug Repurposing for Atopic Dermatitis by Integration of Gene Networking and Genomic Information.通过基因网络和基因组信息的整合实现特应性皮炎的药物再利用。
Front Immunol. 2021 Oct 13;12:724277. doi: 10.3389/fimmu.2021.724277. eCollection 2021.
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Ontological Organization and Bioinformatic Analysis of Adverse Drug Reactions From Package Inserts: Development and Usability Study.从药品说明书中提取药物不良反应的本体组织和生物信息学分析:开发和可用性研究。
J Med Internet Res. 2020 Jul 20;22(7):e20443. doi: 10.2196/20443.
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Approaches Based on Artificial Intelligence and the Internet of Intelligent Things to Prevent the Spread of COVID-19: Scoping Review.基于人工智能和智能物联网预防COVID-19传播的方法:范围综述
J Med Internet Res. 2020 Aug 10;22(8):e19104. doi: 10.2196/19104.
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A Knowledge Graph of Combined Drug Therapies Using Semantic Predications From Biomedical Literature: Algorithm Development.利用生物医学文献中的语义谓词构建的联合药物治疗知识图谱:算法开发
JMIR Med Inform. 2020 Apr 28;8(4):e18323. doi: 10.2196/18323.
接受帕罗西汀或文拉法辛治疗的帕金森病伴抑郁患者的康复轨迹。
Parkinsonism Relat Disord. 2016 Feb;23:80-5. doi: 10.1016/j.parkreldis.2015.12.013. Epub 2015 Dec 21.
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Nucleic Acids Res. 2016 Jan 4;44(D1):D1075-9. doi: 10.1093/nar/gkv1075. Epub 2015 Oct 19.
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Neuropathol Appl Neurobiol. 2016 Aug;42(5):423-35. doi: 10.1111/nan.12263. Epub 2015 Sep 25.
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Combined therapy of Di-Huang-Yi-Zhi with Donepezil in patients with Parkinson's disease dementia.地黄饮子联合多奈哌齐治疗帕金森病痴呆患者
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